View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12680_high_20 (Length: 275)
Name: NF12680_high_20
Description: NF12680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12680_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 7e-89; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 34 - 265
Target Start/End: Complemental strand, 4908736 - 4908501
Alignment:
| Q |
34 |
cttagtatttagccactctgtttttgttagtatatgagaaggttttcttgatatggtgatgttggtagtgaagaaaagatttgttagtgatatttagaac |
133 |
Q |
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| T |
4908736 |
cttagtatttagccactctgtttttgttagtatatgagaaggttttcttgatatggtgatgttggtattgaaaaaaagatttgttagtgatatttagaac |
4908637 |
T |
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| Q |
134 |
tttgggaggatc-----aaagagccaatatatttttaaaactaatacaaacgatgacnnnnnnnnncacaacaaattattcactatgagaagcactcatt |
228 |
Q |
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| T |
4908636 |
tttgggaggatcaaattaaagagccaatatatttttaaaactaatacaaaggatgacaaaaaaaaa-acaacaaattattcactatgagaagcactcatt |
4908538 |
T |
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| Q |
229 |
gtttggaagaacaattctcaaagggaattcagtgaac |
265 |
Q |
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| T |
4908537 |
gtttggaagaacaattctcaaagggaatttagtgaac |
4908501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 150
Target Start/End: Complemental strand, 4902815 - 4902698
Alignment:
| Q |
34 |
cttagtatttagccactctgtttttgttagtatatgagaaggttttcttgatatggtgatgttggtagt-gaagaaaagatttgttagtgatatttagaa |
132 |
Q |
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| T |
4902815 |
cttagtatatagccattctgtttttggtagtaaatgagaaggttttcatgagatggtgatgttgaaggtggaaaataaggtgtgttagtgatttttagaa |
4902716 |
T |
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| Q |
133 |
ctttgggaggatcaaaga |
150 |
Q |
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| T |
4902715 |
ctttgggaggatcaaaga |
4902698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 156
Target Start/End: Complemental strand, 4985004 - 4984904
Alignment:
| Q |
57 |
ttgttagtatatgagaaggttttcttgatatggtgatgttggtagt-gaagaaaagatttgttagtgatatttagaactttgggaggatcaaagagccaa |
155 |
Q |
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| T |
4985004 |
ttgttagtatatgagaaggttttcttgagatggtgatattggaagtggaaaaaaatgtgtgttagtgatttttagagtgttggatggatcaaagagccaa |
4984905 |
T |
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| Q |
156 |
t |
156 |
Q |
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| T |
4984904 |
t |
4984904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 170
Target Start/End: Complemental strand, 4938334 - 4938201
Alignment:
| Q |
41 |
tttagccactctgtttttgttagtatatgagaaggttttc--ttgatatggtgatgttggtagtgaa--gaaaagatttgttagtgatatttagaacttt |
136 |
Q |
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| T |
4938334 |
tttagtcactatgtatttggtagtatatgataaggttttcaattgagatggtgatgttaggagtgaaaagaaaagggttgttggtgatttttagatagtt |
4938235 |
T |
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| Q |
137 |
gggaggatcaaagagccaatatatttttaaaact |
170 |
Q |
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| T |
4938234 |
gggtggatcaaagagccactatatttctaaaact |
4938201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 4896907 - 4896837
Alignment:
| Q |
115 |
tgttagtgatatttagaactttgggaggatcaaagagccaatatatttttaaaactaatacaaacgatgac |
185 |
Q |
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| T |
4896907 |
tgttagtggtttttagaactttgggtggatcataaagcaaatatatttttaaaacaaatacaaaggatgac |
4896837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 4929941 - 4929887
Alignment:
| Q |
115 |
tgttagtgatatttagaactttgggaggatcaaagagccaatatatttttaaaac |
169 |
Q |
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| T |
4929941 |
tgttagtgatttttagaatattgggtggatcaaagagcctatatatttttaaaac |
4929887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 185
Target Start/End: Complemental strand, 4916658 - 4916530
Alignment:
| Q |
61 |
tagtatatgagaaggttttc--ttgatatggtgatgttggtagtgaa--gaaaagatttgttagtgatatttagaactttgggaggatcaaagagccaat |
156 |
Q |
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||||||||||||||||||| |||| ||||||||||| | |||||| ||||| | |||| | ||| |||||| ||||| ||||||||||| |||| |
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| T |
4916658 |
tagtatatgagaaggttttaaattgagatggtgatgttaggagtgaaaagaaaaaaggtgttggcgatttttagatagttgggtggatcaaagagtcaat |
4916559 |
T |
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| Q |
157 |
atatttttaaaactaatacaaacgatgac |
185 |
Q |
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| T |
4916558 |
atatttctaaaacttgtacaaaagatgac |
4916530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 22009611 - 22009549
Alignment:
| Q |
201 |
aaattattcactatgagaagcactcattgtttggaagaacaattctcaaagggaattcagtgaa |
264 |
Q |
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| T |
22009611 |
aaattattctttatgagaagcactcgttgtt-ggaagaacaacactcaaagggaatttagtgaa |
22009549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 44309893 - 44309831
Alignment:
| Q |
201 |
aaattattcactatgagaagcactcattgtttggaagaacaattctcaaagggaattcagtgaa |
264 |
Q |
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| T |
44309893 |
aaattattctttatgagaagcactcgttgtt-ggaagaacaacactcaaagggaatttagtgaa |
44309831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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