View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12680_high_3 (Length: 747)
Name: NF12680_high_3
Description: NF12680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12680_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 674; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 674; E-Value: 0
Query Start/End: Original strand, 10 - 728
Target Start/End: Original strand, 5292323 - 5293041
Alignment:
| Q |
10 |
gagatgaaaccaatacacaagaaaatgtccaccatatagagattaatatcctaatccatttgactctttgaacgatcaaggaaacagacaaagaaatcca |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5292323 |
gagatgaaaccaatacacaagaaaatgtccaccatatagagattaatatcctaatccatttgactctttgaacgatcaaggaaacagacaaagaaatcca |
5292422 |
T |
|
| Q |
110 |
aatcaatcccttgataatgcaactcagtttctcagagctatcagttttagctatgaaatcccacaatccaatactgaaaaatgcaatgctaatagcacca |
209 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5292423 |
aatcaatcccttgataatgcaactcagtttctcagagttatcagttttagctatgaaatcccacaatccaatactgaaaaatgcaatgctaatagtacca |
5292522 |
T |
|
| Q |
210 |
caacaaattgagacaataatgaaaatccagcattttccgtggcttccatttgtagaacnnnnnnngattaaagtgataatcaaagatgtgcaatagacac |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5292523 |
caacaaattgagacaataatgaaaatccagcattttccgtggcttccatttgtagaactttttctgattaaagtgataatcaaagatgtgcaatagacac |
5292622 |
T |
|
| Q |
310 |
atacaaagagtatattgatagtgtctattaagctcctttgagaacatacagatttgaaatcgaaattcttcaaacaaatccatgaaatttcacctgcaca |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5292623 |
atacaaagagtatattgatagtgtctattaagctcctttgagaacataaagaattgaaatcgaaattcttcaaacaaatccatgaaatttcacctgcaca |
5292722 |
T |
|
| Q |
410 |
gcatatatataatccattaaagataaacagttaatcaatgttctaaggttaaataatccattacaaattgtataatacttagttttcttgttactcgaca |
509 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5292723 |
gcatatatataatccattaaagataaacagttaatcaatgttctaaggttaaataatccattacaaattgtacaatacttagttttcttgttactcgaca |
5292822 |
T |
|
| Q |
510 |
acattaaagcgtctgcttacttatcagagaatattagtctacgaaataatcaagaagtgatcatgatagttgtaacatacataaatcaattggtgcaaat |
609 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5292823 |
acattaaagcgtctgcttacttatcagataatattagtctacgaaataatcaagaagtgatcatgatagttgtaacatacataaatcaattggtgcaaat |
5292922 |
T |
|
| Q |
610 |
taaaaaagcatgaatctgttacataatatagctggaagaagatacaatgaaagttacctattgtgttatcaaagtaagccatttttggagcttgaatttg |
709 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5292923 |
taaaaaagcatgaatctgttacataatatagctggaagaagatacaatgaaagttacctattgtgttatcaaagtaagccatttttggagcttgaatttg |
5293022 |
T |
|
| Q |
710 |
aatagtttttgttccttac |
728 |
Q |
| |
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||||||||||||||||||| |
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| T |
5293023 |
aatagtttttgttccttac |
5293041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 10 - 407
Target Start/End: Complemental strand, 15124024 - 15123618
Alignment:
| Q |
10 |
gagatgaaaccaatacacaagaaaatgtccaccatatagagattaatatcctaatccatttgactctttgaacgatcaaggaaacagacaaagaaatcca |
109 |
Q |
| |
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||||||||||||||| ||||||| | ||||||||||||| ||||||| |||| | |||||| ||||||||| ||||| ||||||| ||||||||||| |
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| T |
15124024 |
gagatgaaaccaatatacaagaagaaagccaccatatagagtttaatattctaaccaatttgattctttgaacaatcaatgaaacagcaaaagaaatcca |
15123925 |
T |
|
| Q |
110 |
aatcaatcccttgataatgcaac---------tcagtttctcagagctatcagttttagctatgaaatcccacaatccaatactgaaaaatgcaatgcta |
200 |
Q |
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||| ||||| |||||||||||| |||||| ||||||| |||||||||||||||| | || ||| || |||| ||||||||||||||||||| |
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| T |
15123924 |
aatgaatcctttgataatgcaaactaccaaattcagttcctcagagttatcagttttagctataagattccataagccaaaactgaaaaatgcaatgcta |
15123825 |
T |
|
| Q |
201 |
atagcaccacaacaaattgagacaataatgaaaatccagcattttccgtggcttccatttgtagaacnnnnnnngattaaagtgataatcaaagatgtgc |
300 |
Q |
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||| ||||||| ||||||||||||| |||| |||||||||||| |||||| |||||||| ||| |||||||||||||| |||||||||| |
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| T |
15123824 |
ataagtgcacaacagattgagacaataaggaaattccagcattttctttggctttcatttgtacaactttttctgattaaagtgataagcaaagatgtgt |
15123725 |
T |
|
| Q |
301 |
aatagacacatacaaagagtatattgatagtgtctattaagctcctttgagaacatacagatttgaaatcgaaattcttcaaacaaatccatgaaatttc |
400 |
Q |
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| |||||||| | ||||||||| ||||| ||||||| |||||| ||||||||||||| ||| || ||||| || ||||| | |||| ||||||||||||| |
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| T |
15123724 |
agtagacacagagaaagagtatgttgattgtgtctactaagcttctttgagaacataaagaatttaaatcaaacttcttaagacaagtccatgaaatttc |
15123625 |
T |
|
| Q |
401 |
acctgca |
407 |
Q |
| |
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||||||| |
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| T |
15123624 |
acctgca |
15123618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 659 - 717
Target Start/End: Original strand, 14952189 - 14952247
Alignment:
| Q |
659 |
aaagttacctattgtgttatcaaagtaagccatttttggagcttgaatttgaatagttt |
717 |
Q |
| |
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|||||||||||||||||| | |||||||| |||||||||||||||||||||||| |||| |
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| T |
14952189 |
aaagttacctattgtgttgttaaagtaagtcatttttggagcttgaatttgaatggttt |
14952247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 410 - 459
Target Start/End: Original strand, 5284701 - 5284750
Alignment:
| Q |
410 |
gcatatatataatccattaaagataaacagttaatcaatgttctaaggtt |
459 |
Q |
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||||||||||||||||||||||| ||||| ||||||||||||| |||||| |
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| T |
5284701 |
gcatatatataatccattaaagagaaacaattaatcaatgttccaaggtt |
5284750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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