View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12680_high_7 (Length: 414)

Name: NF12680_high_7
Description: NF12680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12680_high_7
NF12680_high_7
[»] chr7 (8 HSPs)
chr7 (3-270)||(43928488-43928755)
chr7 (1-271)||(45162001-45162274)
chr7 (4-271)||(29188465-29188734)
chr7 (2-271)||(25599054-25599314)
chr7 (11-226)||(21156741-21156956)
chr7 (20-271)||(3688416-3688662)
chr7 (191-271)||(19067669-19067749)
chr7 (363-396)||(43928357-43928390)
[»] chr6 (2 HSPs)
chr6 (1-269)||(19311035-19311304)
chr6 (192-271)||(19654002-19654081)
[»] chr4 (3 HSPs)
chr4 (1-270)||(24008402-24008674)
chr4 (1-68)||(52107573-52107640)
chr4 (119-271)||(5046017-5046169)
[»] chr2 (4 HSPs)
chr2 (1-225)||(33629195-33629419)
chr2 (4-155)||(23343973-23344124)
chr2 (192-271)||(23343812-23343891)
chr2 (101-183)||(36237753-36237836)
[»] chr8 (7 HSPs)
chr8 (59-268)||(25929236-25929445)
chr8 (1-269)||(42007545-42007811)
chr8 (20-271)||(17725427-17725673)
chr8 (22-217)||(26395171-26395356)
chr8 (101-270)||(28930705-28930874)
chr8 (191-271)||(3418357-3418437)
chr8 (206-248)||(26395493-26395535)
[»] chr1 (4 HSPs)
chr1 (125-242)||(4134668-4134785)
chr1 (91-271)||(4433121-4433301)
chr1 (191-271)||(34309170-34309250)
chr1 (192-271)||(23026615-23026694)
[»] chr3 (3 HSPs)
chr3 (91-271)||(13476234-13476414)
chr3 (101-271)||(45081252-45081423)
chr3 (101-183)||(46150580-46150662)
[»] chr5 (1 HSPs)
chr5 (146-232)||(22212873-22212959)


Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 3 - 270
Target Start/End: Complemental strand, 43928755 - 43928488
Alignment:
Q  3 gaattgcatttaacaactaatattttcaattcattctaaacaataatatctttgaagtattttaattattcaactatggagtatttcaattttgtagaca 102  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43928755 gaattgcatttaacaactaatatttccaattcattctaaacaataatatctttgaagtattttaattattcaactatggagtatttcaattttgcagaca 43928656  T
Q  103 agagaataaggagaattatgataggattatgtttccaattgaggttttgtaatcattaaaaacaataatagtgtgtgattgnnnnnnntgatacacaata 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||    
T  43928655 agagaataaggagaattatgataggattatgtttccaattgaggttttgtaatcattaaaaacaataatagtgtgtgattgaaaaaaaggatacacaata 43928556  T
Q  203 aataaaaatgtggcattattattaacctttcattaaataagatcaacaattaagatttggtgtcaacg 270  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||| | || ||||||||||||||||    
T  43928555 aataaaaatgtggcactattattaacctttgattaaataagatcaatagttgagatttggtgtcaacg 43928488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 45162274 - 45162001
Alignment:
Q  1 gggaattgcatttaacaactaatattttcaattcattctaaacaataatatctttgaagtattttaattattcaactatggagtatttcaattttgtaga 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||    
T  45162274 gggaattgcatttaacaactaatatttccaattcattctaaacaataatatctttgaagtattttaattattcaactatagaatatttcaattttgcaga 45162175  T
Q  101 caagagaataaggagaattatgataggattatgtttccaattgaggttttgtaatcattaaaaacaataatagtgtgtgattg---nnnnnnntgataca 197  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||           ||||||    
T  45162174 caagagaataaggagaattatgataggattatgtttccaatttaggttttgtaatcattaaaaacaataatagtgtgtgattgaaaaaaaaaaggataca 45162075  T
Q  198 caataaataaaaatgtggcattattattaacctttcattaaataagatcaacaattaagatttggtgtcaacga 271  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||| || |||||||||||||||||    
T  45162074 caataaataaaaatgtggcactattattaacctttgattaaataagatcaacagttgagatttggtgtcaacga 45162001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 4 - 271
Target Start/End: Original strand, 29188465 - 29188734
Alignment:
Q  4 aattgcatttaacaactaatattttcaattcattctaaacaataatatctttgaagtattttaattattcaactatggagtatttcaattttgtagacaa 103  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29188465 aattgcatttaacaactaatatttccaattcattttaaacaataatatctttgaagtattttaattattcaactatggagtatttcaattttgcagacaa 29188564  T
Q  104 gagaataaggagaattatgataggattatgtttccaattgaggttttgtaatcattaaaaacaataatagtgtgtgattg--nnnnnnntgatacacaat 201  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||          ||||||||||    
T  29188565 gagaataaggagaattatgatatgattatgtttccaatttaggttttgtaatcattaaaaacaataatagtgtgtgattgaaaaaaaaaagatacacaat 29188664  T
Q  202 aaataaaaatgtggcattattattaacctttcattaaataagatcaacaattaagatttggtgtcaacga 271  Q
    |||||||||||||||| |||||||||| ||| ||||||||||||||||| || |||||||||||||||||    
T  29188665 aaataaaaatgtggcactattattaacttttgattaaataagatcaacagttgagatttggtgtcaacga 29188734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 2 - 271
Target Start/End: Complemental strand, 25599314 - 25599054
Alignment:
Q  2 ggaattgcatttaacaactaatattttcaattcattctaaacaataatatctttgaagtattttaattattcaactatggagtatttcaa-ttttgtaga 100  Q
    |||||||||||||||||||||||||| |||||||||| |||          || |||||||||||||||||||||||||||||||||||| ||||| |||    
T  25599314 ggaattgcatttaacaactaatatttccaattcattcaaaa----------ttggaagtattttaattattcaactatggagtatttcaaattttgcaga 25599225  T
Q  101 caagagaataaggagaattatgataggattatgtttccaattgaggttttgtaatcattaaaaacaataatagtgtgtgattgnnnnnnntgatacacaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||        |||||||||    
T  25599224 caagagaataaggagaattatgataggattatgtttccaatttaggttttgtaatcattaaaaataataatagtgtgtgattgaaaaaaaggatacacaa 25599125  T
Q  201 taaataaaaatgtggcattattattaacctttcattaaataagatcaacaattaagatttggtgtcaacga 271  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||| ||| |||||||||||||||||    
T  25599124 taaataaaaatgtggcactattattaacctttgattaaataagatcaacgattgagatttggtgtcaacga 25599054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 11 - 226
Target Start/End: Original strand, 21156741 - 21156956
Alignment:
Q  11 tttaacaactaatattttcaattcattctaaacaataatatctttgaagtattttaattattcaactatggagtatttcaattttgtagacaagagaata 110  Q
    |||| |||||||| ||||||||||||| ||| |||||||||||| |||||||||||||||||||  ||||||| |||| ||||||| | |||| ||||||    
T  21156741 tttaccaactaatgttttcaattcattataagcaataatatcttggaagtattttaattattcagttatggagcattttaattttgaaaacaatagaata 21156840  T
Q  111 aggagaattatgataggattatgtttccaattgaggttttgtaatcattaaaaacaataatagtgtgtgattgnnnnnnntgatacacaataaataaaaa 210  Q
    |||||  | |||||  ||| |||||| |||||  ||||||||||||||| ||||||||||| |||||||||||        |||||||  ||||||||||    
T  21156841 aggagggtcatgatccgatcatgttttcaatttgggttttgtaatcattgaaaacaataatggtgtgtgattgaaagaaaggatacaccgtaaataaaaa 21156940  T
Q  211 tgtggcattattatta 226  Q
    ||||||| ||| ||||    
T  21156941 tgtggcactataatta 21156956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 3688662 - 3688416
Alignment:
Q  20 taatattttcaattcattctaaacaataatatctttgaagtattttaattattcaactatggagtatttcaattttgtagacaagagaataaggagaatt 119  Q
    |||||||||||||| ||||||||| |||||||||| ||||||| ||| ||||| |  |||||||||||| || ||||  |||||||||| ||| || ||     
T  3688662 taatattttcaattaattctaaacgataatatctt-gaagtatctta-ttatttagttatggagtattttaactttg--gacaagagaagaag-aggatc 3688568  T
Q  120 atgataggattatgtttccaattgaggttttgtaatcattaaaaacaataatagtgtgtgattgnnnnnnntgatacacaataaataaaaatgtggcatt 219  Q
    |||||| |||  |||||||| ||  |||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||| ||| || |    
T  3688567 atgatacgatcttgtttccagtttgggttttgtaatcattaaaaacaataatagtgtgtgattgaaagaaaggatacacaataaataaaaacgtgtcact 3688468  T
Q  220 attattaacctttcattaaataagatcaacaattaagatttggtgtcaacga 271  Q
    || |||||||||| || |||||| || ||    |||||||||||||||||||    
T  3688467 ataattaacctttgatcaaataaaataaatggataagatttggtgtcaacga 3688416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 191 - 271
Target Start/End: Complemental strand, 19067749 - 19067669
Alignment:
Q  191 tgatacacaataaataaaaatgtggcattattattaacctttcattaaataagatcaacaattaagatttggtgtcaacga 271  Q
    ||||||| |||||||| ||||||||||||||||||  ||||| ||||||||| ||||||  || |||||||||||||||||    
T  19067749 tgatacataataaatagaaatgtggcattattattggcctttgattaaataaaatcaacggttgagatttggtgtcaacga 19067669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 363 - 396
Target Start/End: Complemental strand, 43928390 - 43928357
Alignment:
Q  363 tgatagttgttggagcaggcccttctggtctatc 396  Q
    ||||||||||||||||||||||||||||||||||    
T  43928390 tgatagttgttggagcaggcccttctggtctatc 43928357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 19311304 - 19311035
Alignment:
Q  1 gggaattgcatttaacaactaatattttcaattcattctaaacaataatatctttgaagtattttaattattcaactatggagtatttcaattttgtaga 100  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  19311304 gggaattgcatttaacaactaatatttccaattctttctaaacaataatatctttgaagtattttaattattcaactatggagtatttcaattttgcaga 19311205  T
Q  101 caagagaataaggagaattatgataggattatgtttccaattgaggttttgtaatcattaaaaacaataatagtgtgtgattg-nnnnnnntgatacaca 199  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||         ||||||||    
T  19311204 caagagaataatgagaattatgataggattatgtttccaatttaggttttgtaatcattaaaaacaataatagtgtgtgattgaaaaaaaaggatacaca 19311105  T
Q  200 ataaataaaaatgtggcattattattaacctttcattaaataagatcaacaattaagatttggtgtcaac 269  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||| || |||||||||||||||    
T  19311104 ataaataaaaatgtggcactattattaacctttgattaaataagatcaacagttgagatttggtgtcaac 19311035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 192 - 271
Target Start/End: Complemental strand, 19654081 - 19654002
Alignment:
Q  192 gatacacaataaataaaaatgtggcattattattaacctttcattaaataagatcaacaattaagatttggtgtcaacga 271  Q
    |||||||||||||||||||||||| ||||| |||| ||||| ||||||||| || |||  ||||||||||||||||||||    
T  19654081 gatacacaataaataaaaatgtggtattataattagcctttgattaaataaaataaacggttaagatttggtgtcaacga 19654002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 24008674 - 24008402
Alignment:
Q  1 gggaattgcatttaacaactaatattttcaattcattctaaacaataatatctttgaagtattttaattattcaactatggagtatttcaattttgtaga 100  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||    
T  24008674 gggaattgcatttaacaactaatatttccaattcattttaaacaataatatctttgaagtattttaattattcaactatgcagtatttcaattttgcaga 24008575  T
Q  101 caagagaataaggagaattatgataggattatgtttccaattgaggttttgtaatcattaaaaacaataatagtgtgtgattg---nnnnnnntgataca 197  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||           ||||||    
T  24008574 caagagaataaggagaattatgataggattatgtttccaatttaggttttgtaatcattaaaaacaataatagtgtgtgattgaaaaaaaaaaagataca 24008475  T
Q  198 caataaataaaaatgtggcattattattaacctttcattaaataagatcaacaattaagatttggtgtcaacg 270  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||| || ||||||||||||||||    
T  24008474 caataaataaaaatgtggcactattattaacctttgattaaataagatcaacagttgagatttggtgtcaacg 24008402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 52107573 - 52107640
Alignment:
Q  1 gggaattgcatttaacaactaatattttcaattcattctaaacaataatatctttgaagtattttaat 68  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||| || |||||||||||||    
T  52107573 gggaattgcatttaacaactaatatttccaattcgttctaaacaataatattttggaagtattttaat 52107640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 271
Target Start/End: Complemental strand, 5046169 - 5046017
Alignment:
Q  119 tatgataggattatgtttccaattgaggttttgtaatcattaaaaacaataatagtgtgtgattgnnnnnnntgatacacaataaataaaaatgtggcat 218  Q
    ||||||| ||| ||||||||||||   ||||| ||||||||||| ||||||||||||||||||          ||||||||||||| | |||| |||||     
T  5046169 tatgataagatcatgtttccaatttgagttttataatcattaaatacaataatagtgtgtgatcacaagaaaggatacacaataaagagaaatatggcac 5046070  T
Q  219 tattattaacctttcattaaataagatcaacaattaagatttggtgtcaacga 271  Q
    ||  |||| ||||| ||||||||| || |||  || |||||||||||||||||    
T  5046069 taaaattagcctttgattaaataaaataaacggttgagatttggtgtcaacga 5046017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 164; Significance: 2e-87; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 33629195 - 33629419
Alignment:
Q  1 gggaattgcatttaacaactaatattttcaattcattctaaacaataatatctttgaagtattttaattattcaactatggagtatttcaattttgtaga 100  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||    
T  33629195 gggaatttcatttaacaactaatatttccaattcattctaaacaataatatcttggaagtattttaattattcaactatggggtatttcaattttgcaga 33629294  T
Q  101 caagagaataaggagaattatgataggattatgtttccaattgaggttttgtaatcattaaaaacaataatagtgtgtgattgnnnnnnntgatacacaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||        |||||||||    
T  33629295 caagagaataaggagaattatgataggattatgtttccaatttaggttttgtaatcattaaaaataataatagtgtgtgattgaataaaaggatacacaa 33629394  T
Q  201 taaataaaaatgtggcattattatt 225  Q
    |||||||||||||| || |||||||    
T  33629395 taaataaaaatgtgacactattatt 33629419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 4 - 155
Target Start/End: Complemental strand, 23344124 - 23343973
Alignment:
Q  4 aattgcatttaacaactaatattttcaattcattctaaacaataatatctttgaagtattttaattattcaactatggagtatttcaattttgtagacaa 103  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||  | ||||||||||||| ||||||    
T  23344124 aattgcatttaacaactaatatttccaattcattttaaacaataatatctttgaagtattttaattattcaactataaaatatttcaattttgcagacaa 23344025  T
Q  104 gagaataaggagaattatgataggattatgtttccaattgaggttttgtaat 155  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  23344024 gagaataaagagaattatgataggattatgtttccaatttaggttttgtaat 23343973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 192 - 271
Target Start/End: Complemental strand, 23343891 - 23343812
Alignment:
Q  192 gatacacaataaataaaaatgtggcattattattaacctttcattaaataagatcaacaattaagatttggtgtcaacga 271  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| || ||||||| |||||||||    
T  23343891 gatacacaataaataaaaatgtggcactattattaacctttgattaaataagatcaacagttgagatttgatgtcaacga 23343812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 183
Target Start/End: Complemental strand, 36237836 - 36237753
Alignment:
Q  101 caagagaataaggagaattatgataggattatgtttccaattgaggttttgtaa-tcattaaaaacaataatagtgtgtgattg 183  Q
    ||||||||| || || || |||||| ||| ||||||||||||  |||||||||| ||||| |||||||||||||||||||||||    
T  36237836 caagagaatgagtaggatcatgatatgatcatgtttccaatttcggttttgtaaatcattgaaaacaataatagtgtgtgattg 36237753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 4e-57; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 59 - 268
Target Start/End: Original strand, 25929236 - 25929445
Alignment:
Q  59 gtattttaattattcaactatggagtatttcaattttgtagacaagagaataaggagaattatgataggattatgtttccaattgaggttttgtaatcat 158  Q
    ||||||||||||||||  |||||||||||| ||||||| |||||| |||||||| |||||||||||| ||| |||||| |||||  ||||||||||||||    
T  25929236 gtattttaattattcagttatggagtattttaattttgcagacaaaagaataagaagaattatgatatgatcatgttttcaatttgggttttgtaatcat 25929335  T
Q  159 taaaaacaataatagtgtgtgattgnnnnnnntgatacacaataaataaaaatgtggcattattattaacctttcattaaataagatcaacaattaagat 258  Q
    |||||||||||||||||||||||||        ||||||||||||||||||| |||| |||||||||||||||| ||||||||| | ||||| || ||||    
T  25929336 taaaaacaataatagtgtgtgattgaaaaaaaagatacacaataaataaaaacgtgggattattattaacctttgattaaataaaaacaacagttgagat 25929435  T
Q  259 ttggtgtcaa 268  Q
    ||||||||||    
T  25929436 ttggtgtcaa 25929445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 42007811 - 42007545
Alignment:
Q  1 gggaattgcatttaacaactaatattttcaattcattctaaacaataatatctttgaagtattttaattattcaactatggagtatttcaattttgtaga 100  Q
    |||||||||||||| |||||||||||||  ||||||| |||||||||||||||| |||||||||||||||| ||  |||||||||||| | ||||| | |    
T  42007811 gggaattgcatttaccaactaatatttttcattcattttaaacaataatatcttggaagtattttaattatccagttatggagtattttatttttgcaaa 42007712  T
Q  101 caagagaataaggagaattatgataggattatgtttccaattgaggttttgtaatcattaaaaacaataatagtgtgtgattgnnnnnnntgatacacaa 200  Q
    | ||||||||| ||||||||||||| || || |||||||||| | |||||||||||||||||| |||||||| ||||||||||       ||||||||||    
T  42007711 ccagagaataaagagaattatgatacga-taagtttccaatttaagttttgtaatcattaaaatcaataataatgtgtgattg-aaaaaatgatacacaa 42007614  T
Q  201 taaataaaaatgtggcattattattaacctttcattaaataagatcaacaattaagatttggtgtcaac 269  Q
    |||||| ||| ||| || || |||||||| || ||||||||| || |||  || |||||||||||||||    
T  42007613 taaatacaaacgtgacactactattaaccattgattaaataaaattaacggttgagatttggtgtcaac 42007545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 271
Target Start/End: Original strand, 17725427 - 17725673
Alignment:
Q  20 taatattttcaattcattctaaacaataatatctttgaagtattttaattattcaactatggagtatttcaattttgtagacaagagaataaggagaatt 119  Q
    |||||||||||||| ||||||||| |||||||||| ||||||| ||| ||||| |  |||||||||||| || ||||  |||||||||| ||| || ||     
T  17725427 taatattttcaattaattctaaacgataatatctt-gaagtatctta-ttatttatttatggagtattttaactttg--gacaagagaagaag-aggatc 17725521  T
Q  120 atgataggattatgtttccaattgaggttttgtaatcattaaaaacaataatagtgtgtgattgnnnnnnntgatacacaataaataaaaatgtggcatt 219  Q
    |||||| |||  |||||||| ||  |||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||| ||| || |    
T  17725522 atgatacgatcttgtttccagtttgggttttgtaatcattaaaaacaataatagtgtgtgattgaaagaaaggatacacaataaataaaaacgtgtcact 17725621  T
Q  220 attattaacctttcattaaataagatcaacaattaagatttggtgtcaacga 271  Q
    || |||||||||| || |||||| || ||    || ||||||||||||||||    
T  17725622 ataattaacctttgatcaaataaaataaatggataggatttggtgtcaacga 17725673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 22 - 217
Target Start/End: Original strand, 26395171 - 26395356
Alignment:
Q  22 atattttcaattcattctaaacaataatatctttgaagtattttaattattcaactatggagtatttcaattttgtagacaagagaataaggagaattat 121  Q
    |||||| |||||||||||||| |||||||||||  |||||||||||||||| |  |||||||||||||||||||| ||||||         |||||||||    
T  26395171 atatttccaattcattctaaaaaataatatcttgcaagtattttaattatttagttatggagtatttcaattttgcagacaa---------gagaattat 26395261  T
Q  122 gataggattatgtttccaattgaggttttgtaatcattaaaaacaataatagtgtgtgattgnnnnnnntgatacacaataaataaaaatgtggca 217  Q
    |||||||| |||||| |||||  |||   ||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||    
T  26395262 gataggatcatgttttcaatttgggtacggtaatcattaaaaacaataatagtgtgtgatt-aaaaaaaagatacacaataaataaaaatgtggca 26395356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 270
Target Start/End: Original strand, 28930705 - 28930874
Alignment:
Q  101 caagagaataaggagaattatgataggattatgtttccaattgaggttttgtaat-cattaaaaacaataatagtgtgtgattgnnnnnnntgatacaca 199  Q
    ||||||||| || || || |||||| ||| ||||||||||||   |||||||||| ||||||||||||||||||||||||||||        | ||||||    
T  28930705 caagagaatgagtaggatcatgatatgatcatgtttccaatttcagttttgtaattcattaaaaacaataatagtgtgtgattgaaaagaagggtacaca 28930804  T
Q  200 ataaataaaaatgtggcattattattaacctttcattaaataagatcaacaattaagatttggtgtcaacg 270  Q
    |||||||||||||||||| |||| |||||| || || |||| | ||||||   | ||||||||||||||||    
T  28930805 ataaataaaaatgtggcactatttttaacccttgatcaaatta-atcaacggatgagatttggtgtcaacg 28930874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 271
Target Start/End: Original strand, 3418357 - 3418437
Alignment:
Q  191 tgatacacaataaataaaaatgtggcattattattaacctttcattaaataagatcaacaattaagatttggtgtcaacga 271  Q
    ||||||| |||||||| ||||||||||||||||||  ||||| ||||||||| ||||||  || |  ||||||||||||||    
T  3418357 tgatacataataaatagaaatgtggcattattattggcctttgattaaataaaatcaacggttgaagtttggtgtcaacga 3418437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 248
Target Start/End: Original strand, 26395493 - 26395535
Alignment:
Q  206 aaaaatgtggcattattattaacctttcattaaataagatcaa 248  Q
    |||||||||||| |||||||||||||| ||||||||| |||||    
T  26395493 aaaaatgtggcactattattaacctttgattaaataaaatcaa 26395535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 125 - 242
Target Start/End: Original strand, 4134668 - 4134785
Alignment:
Q  125 aggattatgtttccaattgaggttttgtaatcattaaaaacaataatagtgtgtgattgnnnnnnntgatacacaataaataaaaatgtggcattattat 224  Q
    ||||| ||||||| ||||  |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||| ||| ||    
T  4134668 aggataatgtttctaatttgggttttgtaatcattaaaaacaataatagtgtgtgattgaaagaaatgatacacaataaataaaaatgtggcactataat 4134767  T
Q  225 taacctttcattaaataa 242  Q
    |||||||| ||| |||||    
T  4134768 taacctttgatttaataa 4134785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 91 - 271
Target Start/End: Complemental strand, 4433301 - 4433121
Alignment:
Q  91 attttgtagacaagagaataaggagaattatgataggattatgtttccaattgaggttttgtaatcattaaaaacaataatagtgtgtgattgnnnnnnn 190  Q
    |||||| |||||| |||||||||||||| | |||| ||| || |||||||||   |||||||||||||| |||||||||||||||||||||||           
T  4433301 attttgcagacaaaagaataaggagaatcaagatacgatcatctttccaatttgagttttgtaatcatttaaaacaataatagtgtgtgattgaaagaaa 4433202  T
Q  191 tgatacacaataaataaaaatgtggcattattattaacctttcattaaataagatcaacaattaagatttggtgtcaacga 271  Q
     ||| |||||||||||||||||||||| |||  ||||||||| || |||| | ||||||   | |||||||||||||||||    
T  4433201 ggatgcacaataaataaaaatgtggcactatatttaacctttgatcaaattaaatcaacggatgagatttggtgtcaacga 4433121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 191 - 271
Target Start/End: Original strand, 34309170 - 34309250
Alignment:
Q  191 tgatacacaataaataaaaatgtggcattattattaacctttcattaaataagatcaacaattaagatttggtgtcaacga 271  Q
    ||||||| |||||||| ||||||||||||||||||  ||||| ||||||||| ||||||  || |||||||||||||||||    
T  34309170 tgatacataataaatagaaatgtggcattattattggcctttgattaaataaaatcaacggttgagatttggtgtcaacga 34309250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 192 - 271
Target Start/End: Complemental strand, 23026694 - 23026615
Alignment:
Q  192 gatacacaataaataaaaatgtggcattattattaacctttcattaaataagatcaacaattaagatttggtgtcaacga 271  Q
    ||||||||||||||| ||| |||||| ||| ||||| |||| ||||||||| || || | || ||||||| |||||||||    
T  23026694 gatacacaataaatataaacgtggcactataattaatctttgattaaataaaataaatagttgagatttgatgtcaacga 23026615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 91 - 271
Target Start/End: Complemental strand, 13476414 - 13476234
Alignment:
Q  91 attttgtagacaagagaataaggagaattatgataggattatgtttccaattgaggttttgtaatcattaaaaacaataatagtgtgtgattgnnnnnnn 190  Q
    |||||| |||||| |||||||||||||| | |||| ||| || |||||||||   |||||||||||||| ||||||||||||||||||| |||           
T  13476414 attttgcagacaaaagaataaggagaatcaagatacgatcatctttccaatttgagttttgtaatcatttaaaacaataatagtgtgtggttgaaagaaa 13476315  T
Q  191 tgatacacaataaataaaaatgtggcattattattaacctttcattaaataagatcaacaattaagatttggtgtcaacga 271  Q
     |||||||||||||||||||||||||| |||  ||||||||| || |||| | ||||||   | |||||||||||||||||    
T  13476314 ggatacacaataaataaaaatgtggcactatatttaacctttgatcaaattaaatcaacggatgagatttggtgtcaacga 13476234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 101 - 271
Target Start/End: Original strand, 45081252 - 45081423
Alignment:
Q  101 caagagaataaggagaattatgataggattatgtttccaattgaggttttgtaa-tcattaaaaacaataatagtgtgtgattgnnnnnnntgatacaca 199  Q
    ||||||||| || || || |||||| ||| ||||||||||||  |||||||||| ||||| |||||||||||| ||||||||||        | ||||||    
T  45081252 caagagaatgagtaggatcatgatatgatcatgtttccaatttcggttttgtaaatcattgaaaacaataataatgtgtgattgaaaagaagggtacaca 45081351  T
Q  200 ataaataaaaatgtggcattattattaacctttcattaaataagatcaacaattaagatttggtgtcaacga 271  Q
    ||||| |||||||||||  |||  ||| ||||| || |||||| || ||   || |||||||||||||||||    
T  45081352 ataaaaaaaaatgtggctctatatttagcctttgatcaaataaaataaatggttgagatttggtgtcaacga 45081423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 183
Target Start/End: Original strand, 46150580 - 46150662
Alignment:
Q  101 caagagaataaggagaattatgataggattatgtttccaattgaggttttgt-aatcattaaaaacaataatagtgtgtgattg 183  Q
    ||||||||| || || || |||||| ||| ||||||||||||  |||||||| |||||||  ||||||||||||||||||||||    
T  46150580 caagagaatgagtaggatcatgatatgatcatgtttccaatttcggttttgtaaatcatt-gaaacaataatagtgtgtgattg 46150662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 146 - 232
Target Start/End: Original strand, 22212873 - 22212959
Alignment:
Q  146 gttttgtaatcattaaaaacaataatagtgtgtgattgnnnnnnntgatacacaataaataaaaatgtggcattattattaaccttt 232  Q
    |||||||||||||||||||||||||| |||||| ||||       ||||||||||||||||||||||||||||||| ||||||||||    
T  22212873 gttttgtaatcattaaaaacaataatcgtgtgtaattgaaagaaatgatacacaataaataaaaatgtggcattataattaaccttt 22212959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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