View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12680_high_9 (Length: 400)
Name: NF12680_high_9
Description: NF12680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12680_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 22 - 396
Target Start/End: Original strand, 30142171 - 30142545
Alignment:
| Q |
22 |
tggaaagctaagagaaaattctacaacttttatgttgaggacagaacccagttcggagcggaaagtagtcaaataatcgtgttttgttccatacgttatt |
121 |
Q |
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||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||| |||| ||||||||||||| ||||||||||| || ||||| |
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| T |
30142171 |
tggaaagctaagagaaaatgctacaactttcatgttgaggacagaacccagttccgagcacaaaggagtcaaataatcgcgttttgttccagacattatt |
30142270 |
T |
|
| Q |
122 |
ttcaataattaatttcgagacaacatttgttttttggcccgatacttgtaaggcccgtttttcccatgtaatatnnnnnnnnnnnnncacagctagggct |
221 |
Q |
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|| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30142271 |
ttaaataattaattttgagacaacatttgtttttcggcccgatacttgtaaggcccgtttttcccatgtaatataaaaactacaaaacacagctagggct |
30142370 |
T |
|
| Q |
222 |
gctcattctgcattcacgtttcagaaaatagaaaccctaaggcagccgcttgctatggagaactaatctctctttcgatccattggtgaaggaactttgt |
321 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30142371 |
gctcagtctgcattcacgtttcagaaaatagaaaccctaaggcagccgcttgctatggagaactaatctctctatcgatccattggtgaaggaactttgt |
30142470 |
T |
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| Q |
322 |
tgttactcttgaggttctgttttaatagcaatttgttatgtttatgctgatcatatatcaattttcttctctctc |
396 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
30142471 |
tgttactcttgaggttcggttttaatagcaatttgttatgtttaagctgatcatatatcaattttcttgtctctc |
30142545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 215 - 396
Target Start/End: Original strand, 19800571 - 19800752
Alignment:
| Q |
215 |
tagggctgctcattctgcattcacgtttcagaaaatagaaaccctaaggcagccgcttgctatggagaactaatctctctttcgatccattggtgaagga |
314 |
Q |
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| T |
19800571 |
tagggctgctcattctgcattcacgtttcagaaaatagaaatcctaaggcaaccgcttgctatggagaactaatctctctttcgatccattggtgaagga |
19800670 |
T |
|
| Q |
315 |
actttgttgttactcttgaggttctgttttaatagcaatttgttatgtttatgctgatcatatatcaattttcttctctctc |
396 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
19800671 |
actttgttgttactcttgaggttcggttttaatagcaatttgttatgtttatgctgatcatatatcaattttcttgtctctc |
19800752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 21 - 195
Target Start/End: Original strand, 19800361 - 19800535
Alignment:
| Q |
21 |
ctggaaagctaagagaaaattctacaacttttatgttgaggacagaacccagttcggagcggaaagtagtcaaataatcgtgttttgttccatacgttat |
120 |
Q |
| |
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|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| | |||| |||||| |||||||||||||||||| ||||||| |
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| T |
19800361 |
ctggaaagctaagagaaaattctagaactttcatgttgaggacagaacccagttcggagtgcaaaggagtcaagtaatcgtgttttgttccagacgttat |
19800460 |
T |
|
| Q |
121 |
tttcaataattaatttcgagacaacatttgttttttggcccgatacttgtaaggcccgtttttcccatgtaatat |
195 |
Q |
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||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
19800461 |
tttaaataattaatttcgagacaacatttgtttttcggcccgatactcgtaaggcccgtttttcccatgtaatat |
19800535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 24 - 396
Target Start/End: Complemental strand, 30742536 - 30742164
Alignment:
| Q |
24 |
gaaagctaagagaaaattctacaacttttatgttgaggacagaacccagttcggagcggaaagtagtcaaataatcgtgttttgttccatacgttatttt |
123 |
Q |
| |
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|||||||||||| |||| |||||||||| ||||||||| || |||||||||| ||||| |||| ||||||||||||| |||||||||| |||||||||| |
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| T |
30742536 |
gaaagctaagagcaaatgctacaactttcatgttgaggccaaaacccagttccgagcgcaaaggagtcaaataatcgcattttgttccagacgttatttt |
30742437 |
T |
|
| Q |
124 |
caataattaatttcgagacaacatttgttttttggcccgatacttgtaaggcccgtttttcccatgtaatatnnnnnnnnnnnnncacagctagggctgc |
223 |
Q |
| |
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|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
30742436 |
aaataattaatttcgaggcaacatttgtttttcggcccgatacttgtaaggcccgtttttcccatgtaagataaaaactaaaaaacacagctagggctgc |
30742337 |
T |
|
| Q |
224 |
tcattctgcattcacgtttcagaaaatagaaaccctaaggcagccgcttgctatggagaactaatctctctttcgatccattggtgaaggaactttgttg |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30742336 |
tcattctgcattcacgtttcagaaaatagaaaccctaaggcagccgcttgctatggagaactaatctctctttcgatccattggcaaaggaactttgttg |
30742237 |
T |
|
| Q |
324 |
ttactcttgaggttctgttttaatagcaatttgttatgtttatgctgatcatatatcaattttcttctctctc |
396 |
Q |
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| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30742236 |
tgactcttgaggttcggttttaatagcaatttgttatgtttatgctgatcatatatcaattttcttgtctctc |
30742164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 22 - 262
Target Start/End: Original strand, 22303149 - 22303389
Alignment:
| Q |
22 |
tggaaagctaagagaaaattctacaacttttatgttgaggacagaacccagttcggagcggaaagtagtcaaataatcgtgttttgttccatacgttatt |
121 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||| |||| ||||||||||||| ||||||||||| |||||||| |
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| T |
22303149 |
tggaaagctaagagaaaatgctacaactttcatgttgaggacagaacccagttccgagcgcaaaggagtcaaataatcgcgttttgttccagacgttatt |
22303248 |
T |
|
| Q |
122 |
ttcaataattaatttcgagacaacatttgttttttggcccgatacttgtaaggcccgtttttcccatgtaatatnnnnnnnnnnnnncacagctagggct |
221 |
Q |
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|| |||||||||||| |||||||||||||||||| ||||||||||||| || ||||||| |||||||||||||| ||||||||||||| |
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| T |
22303249 |
ttgaataattaattttgagacaacatttgtttttcggcccgatacttgcaaagcccgttgttcccatgtaatataaaaactaaaaaacacagctagggct |
22303348 |
T |
|
| Q |
222 |
gctcattctgcattcacgtttcagaaaatagaaaccctaag |
262 |
Q |
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| T |
22303349 |
gctcattctgcattcacgtttcagaaaatagaaaccctaag |
22303389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 258 - 396
Target Start/End: Original strand, 22303939 - 22304077
Alignment:
| Q |
258 |
ctaaggcagccgcttgctatggagaactaatctctctttcgatccattggtgaaggaactttgttgttactcttgaggttctgttttaatagcaatttgt |
357 |
Q |
| |
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|||||| ||| | ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
22303939 |
ctaaggtagctggttgctatggagaattaatctctctttcgatccattggtgacggaactttgttgttactcttgaggttcggttttaatagcaatttgt |
22304038 |
T |
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| Q |
358 |
tatgtttatgctgatcatatatcaattttcttctctctc |
396 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||| |
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| T |
22304039 |
tatgtttatgctgatcatatatcaattttcttgtctctc |
22304077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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