View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12680_low_12 (Length: 364)
Name: NF12680_low_12
Description: NF12680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12680_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 25)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 10979176 - 10979524
Alignment:
| Q |
1 |
aaagacacaatcatcattttctttgccaattttatattctgatctgtgtcattttcaatcgtcacttcccttccatcatgtaatcgatcatatatccaaa |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10979176 |
aaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgttacttcccttccatcatgtaatcgatcatatatccaaa |
10979275 |
T |
|
| Q |
101 |
aagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatctccatcaacaacatcccaaaactatatacatcagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10979276 |
aagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatctccatcaacaacatcccaaaactatatacatcagc |
10979375 |
T |
|
| Q |
201 |
tttgtaagatattgtgccaacatttctgtagaatagttcaggagccatgtatccaatggtccctcttgctgcagttaatgacacaatgcttttatctgta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10979376 |
tttgtaagatattgtgccaacatttctgtagaatagttcaggagccatgtatccaatggtccctcttgctgcagttaatgacacaaagcttttatctgta |
10979475 |
T |
|
| Q |
301 |
ggacagagtctagcaagtccaaaatcagaaacttttggattgaaatttt |
349 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10979476 |
ggacaaagtctagcaagtccaaaatcagaaacttttggattgaaatttt |
10979524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 6 - 349
Target Start/End: Original strand, 11010747 - 11011090
Alignment:
| Q |
6 |
cacaatcatcattttctttgccaattttatattctgatctgtgtcattttcaatcgtcacttcccttccatcatgtaatcgatcatatatccaaaaaggg |
105 |
Q |
| |
|
||||||||||||||||||||| | || || | |||||||||||| || ||||| || ||||| ||||||||||| ||| |||||| ||||||||||| |
|
|
| T |
11010747 |
cacaatcatcattttctttgctagcttcatttcctgatctgtgtcgttctcaattgttacttcacttccatcatgaaatttatcataaatccaaaaagga |
11010846 |
T |
|
| Q |
106 |
aaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatctccatcaacaacatcccaaaactatatacatcagctttgt |
205 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11010847 |
aaataaatttggctggattgctcagccaatgcattcaagttcttccttctacttgccatctccatcaacaacatcccaaaactatatacatcagctttgt |
11010946 |
T |
|
| Q |
206 |
aagatattgtgccaacatttctgtagaatagttcaggagccatgtatccaatggtccctcttgctgcagttaatgacacaatgcttttatctgtaggaca |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11010947 |
aagatattgtgccaacatttctgtagaatagttcaggggccatatatccaatggttcctcttgctgcagttaatgacacaatgcttttatctgtaggaca |
11011046 |
T |
|
| Q |
306 |
gagtctagcaagtccaaaatcagaaacttttggattgaaatttt |
349 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11011047 |
aagtctagctagtccaaaatcagaaacttttggattgaaatttt |
11011090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 7 - 349
Target Start/End: Original strand, 10914447 - 10914789
Alignment:
| Q |
7 |
acaatcatcattttctttgccaattttatattctgatctgtgtcattttcaatcgtcacttcccttccatcatgtaatcgatcatatatccaaaaaggga |
106 |
Q |
| |
|
|||||||||||||||||||||||||| || | ||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10914447 |
acaatcatcattttctttgccaatttcatttcctgatctgtgtcattttcaatagttacttcccttccatcatgtaatcgatcataaatccaaaaaggga |
10914546 |
T |
|
| Q |
107 |
aataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatctccatcaacaacatcccaaaactatatacatcagctttgta |
206 |
Q |
| |
|
||||||||| |||||||| ||||||| ||||||||| ||| ||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
10914547 |
aataaatttcactagattgatcagccaatgcattcaaattcttccttctgcttgccatctccattaacaacatcccaaagctatatacatcagctttgtg |
10914646 |
T |
|
| Q |
207 |
agatattgtgccaacatttctgtagaatagttcaggagccatgtatccaatggtccctcttgctgcagttaatgacacaatgcttttatctgtaggacag |
306 |
Q |
| |
|
|||||||||||| |||||||| ||||||| |||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
10914647 |
agatattgtgccgacatttctatagaataattcaggggccatatatccgatggttcctcttgctgcagttaatgacacaatgcttttatctgtaggagaa |
10914746 |
T |
|
| Q |
307 |
agtctagcaagtccaaaatcagaaacttttggattgaaatttt |
349 |
Q |
| |
|
|| || || |||||||||||||||||||||||||||||||||| |
|
|
| T |
10914747 |
agcctggctagtccaaaatcagaaacttttggattgaaatttt |
10914789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 345
Target Start/End: Original strand, 10903291 - 10903622
Alignment:
| Q |
11 |
tcatcattttctttgccaattttatattctgatctgtgtcattttcaatcgtcacttcccttccatcatgtaatcgatcatatatccaaaaagggaaata |
110 |
Q |
| |
|
|||||||||||||||||||||| || | ||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10903291 |
tcatcattttctttgccaatttcatttcctgatctgtgtcattttcaatagttacttcccttccatcatgtaatcgatcataaatccaaaaagggaaata |
10903390 |
T |
|
| Q |
111 |
aatttggctagattgctcagccattgcattcaagttcctccttctacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagat |
210 |
Q |
| |
|
||||||||||||||| || |||| ||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
10903391 |
aatttggctagattgttcggccaatgcattcaagttcttccttctacttgccatctccattaacaacatcccaaagctatagacatcagctttgtaagat |
10903490 |
T |
|
| Q |
211 |
attgtgccaacatttctgtagaatagttcaggagccatgtatccaatggtccctcttgctgcagttaatgacacaatgcttttatctgtaggacagagtc |
310 |
Q |
| |
|
|| | ||||||||||||||||| |||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
10903491 |
atcattccaacatttctgtagaaaagttcaggggc---atatccaatggttcctcttgctgcagttaatgacacaatgcttttatctgtaggagaaagtc |
10903587 |
T |
|
| Q |
311 |
tagcaagtccaaaatcagaaacttttggattgaaa |
345 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10903588 |
tggcaagtccaaaatcagaaacttttggattgaaa |
10903622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 11005280 - 11004932
Alignment:
| Q |
1 |
aaagacacaatcatcattttctttgccaattttatattctgatctgtgtcattttcaatcgtcacttcccttccatcatgtaatcgatcatatatccaaa |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| || | | |||||||||||| ||||| || ||||| |||||||||||||| || |||| ||||||| |
|
|
| T |
11005280 |
aaagccacaatcatcattttctttgccaatttcatttcttcatctgtgtcattctcaattgttacttcacttccatcatgtaactgaccataaatccaaa |
11005181 |
T |
|
| Q |
101 |
aagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatctccatcaacaacatcccaaaactatatacatcagc |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
11005180 |
aagggaaataaatttggcaagattgctcagccaatggattcaagttcttccttctacttgccatctccatcaacaacatcccaaagctatagacatcagc |
11005081 |
T |
|
| Q |
201 |
tttgtaagatattgtgccaacatttctgtagaatagttcaggagccatgtatccaatggtccctcttgctgcagttaatgacacaatgcttttatctgta |
300 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
11005080 |
tttgtgagatattgtgccgacatttctgtagaatagttcaggggccatgtatccaatggttcctcttgctgcagttaaggacacaatgcttttgtctgta |
11004981 |
T |
|
| Q |
301 |
ggacagagtctagcaagtccaaaatcagaaacttttggattgaaatttt |
349 |
Q |
| |
|
||| | | ||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
11004980 |
ggagaaaccctagctaatccaaaatcagaaacttttggattgaaatttt |
11004932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 45 - 346
Target Start/End: Original strand, 10974142 - 10974443
Alignment:
| Q |
45 |
tgtgtcattttcaatcgtcacttcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaag |
144 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||| ||||||||| |
|
|
| T |
10974142 |
tgtgtcattttcaatagatacttcccttccatcatgtaatcgatcataaatccagaaagggaaataaatttggctagattgatcggccaatgcattcaaa |
10974241 |
T |
|
| Q |
145 |
ttcctccttctacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcaggag |
244 |
Q |
| |
|
||| |||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||| |||||||| | |
|
|
| T |
10974242 |
ttcttccttctactcgccatctccattaacaacatcccaaagctatagacatcagctttgtaagatattgtgccaatatttctgtagaacagttcagggg |
10974341 |
T |
|
| Q |
245 |
ccatgtatccaatggtccctcttgctgcagttaatgacacaatgcttttatctgtaggacagagtctagcaagtccaaaatcagaaacttttggattgaa |
344 |
Q |
| |
|
||||||||||||| || |||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10974342 |
ccatgtatccaatcgttcctcttgcagcagttaatggcacaatgcttttatctgtaggacaaagtctagcaagtccaaaatcagaaacttttggattgaa |
10974441 |
T |
|
| Q |
345 |
at |
346 |
Q |
| |
|
|| |
|
|
| T |
10974442 |
at |
10974443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 347
Target Start/End: Complemental strand, 11028857 - 11028519
Alignment:
| Q |
11 |
tcatcattttctttgccaattttatattctgatctgtgtcattttcaatcgtca--cttcccttccatcatgtaatcgatcatatatccaaaaagggaaa |
108 |
Q |
| |
|
|||||||||||||||||||||| || | ||||||||||||||||||||| | | |||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
11028857 |
tcatcattttctttgccaatttcatttcctgatctgtgtcattttcaatagatatacttcccttccatcatgtaatcgatcataaatccagaaagggaaa |
11028758 |
T |
|
| Q |
109 |
taaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaag |
208 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| | ||| |||||||| | || |||||||| |||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
11028757 |
taaatttggctagattgttcagccaatgcattctaattcttccttctattcgcaatctccattaacaacatcccaaagctatagacatcagctttgtaag |
11028658 |
T |
|
| Q |
209 |
atattgtgccaacatttctgtagaatagttcaggagccatgtatccaatggtccctcttgctgcagttaatgacacaatgcttttatctgtaggacagag |
308 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||| ||| |||||||||| || |
|
|
| T |
11028657 |
atattgtgccaacatttctatagaatagttcaggggccatgtatccaatggttcttcttgctgcagttaatgacacaatgctattacctgtaggacaaag |
11028558 |
T |
|
| Q |
309 |
tctagcaagtccaaaatcagaaacttttggattgaaatt |
347 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| ||||| |
|
|
| T |
11028557 |
tctagctagtccgaaatcagaaacttttggattaaaatt |
11028519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 11033033 - 11033379
Alignment:
| Q |
1 |
aaagacacaatcatcattttctttgccaattttatattctgatctgtgtcattttcaatcgtcacttcccttccatcatgtaatcgatcatatatccaaa |
100 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| || | |||| ||| ||||| ||| |||| |||||||||||| ||||| ||||||| | ||||| |
|
|
| T |
11033033 |
aaagccactatcatcattttctttgccaatttcatttcatgatttgtatcattcagaattgtcatttcccttccatcttgtaactgatcataaacccaaa |
11033132 |
T |
|
| Q |
101 |
aagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatctccatcaacaacatcccaaaactatatacatcagc |
200 |
Q |
| |
|
||||||||||||| ||||| ||||| ||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11033133 |
aagggaaataaatctggcttgattgatcagccaatgcattcaagttcttccttctatttgccatctccatcaacaacatcccaaaactataaacatcagc |
11033232 |
T |
|
| Q |
201 |
tttgtaagatattgtgccaacatttctgtagaatagttcaggagccatgtatccaatggtccctcttgctgcagttaatgacacaatgcttttatctgta |
300 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11033233 |
tttgtaagatattgtgccgacatttcggtagaatagttcaggggccatatatccaatggttcctcttgctgcagttaatgtgacaatgcttttatctgta |
11033332 |
T |
|
| Q |
301 |
ggacagagtctagcaagtccaaaatcagaaacttttggattgaaatt |
347 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
11033333 |
ggacaaagtctagctagtccaaaatcagaaacttttgggttgaaatt |
11033379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 11007580 - 11007928
Alignment:
| Q |
1 |
aaagacacaatcatcattttctttgccaattttatattctgatctgtgtcattttcaatcgtcacttcccttccatcatgtaatcgatcatatatccaaa |
100 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| || | |||| ||| |||| ||||| || | ||| |||||||| ||||| ||||||| | ||||| |
|
|
| T |
11007580 |
aaagccactatcatcattttctttgccaatttcatctcatgatttgtagcattctcaattgttatttctcttccatcttgtaactgatcataaacccaaa |
11007679 |
T |
|
| Q |
101 |
aagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatctccatcaacaacatcccaaaactatatacatcagc |
200 |
Q |
| |
|
|||||||||||| ||||||||||| |||||| | ||| ||||||| |||||||| ||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
11007680 |
aagggaaataaacctggctagattgaccagccaatacatccaagttcttccttctatttgccatctccattaacaacatcccaaaactataaacatcagc |
11007779 |
T |
|
| Q |
201 |
tttgtaagatattgtgccaacatttctgtagaatagttcaggagccatgtatccaatggtccctcttgctgcagttaatgacacaatgcttttatctgta |
300 |
Q |
| |
|
|||||||||||| ||||| ||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11007780 |
tttgtaagatatcgtgccgacatttcggtagaatagttcaggggccatgtatccaatggttcctcttgctgcagttaatgacacaatgcttttatctgta |
11007879 |
T |
|
| Q |
301 |
ggacagagtctagcaagtccaaaatcagaaacttttggattgaaatttt |
349 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11007880 |
ggacaaagtctagcaagtccaaaatcagaaacttttggattgaaatttt |
11007928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 127 - 290
Target Start/End: Original strand, 10901567 - 10901730
Alignment:
| Q |
127 |
tcagccattgcattcaagttcctccttctacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttc |
226 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||| ||||||| |
|
|
| T |
10901567 |
tcagccaatgcattcaagttcttccttctacttgccatctccatcaacaacattccaaaactatagacatcagctttgtgagatattgtgccgacatttc |
10901666 |
T |
|
| Q |
227 |
tgtagaatagttcaggagccatgtatccaatggtccctcttgctgcagttaatgacacaatgct |
290 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||| ||||||||||| |||||||| |||||||| |
|
|
| T |
10901667 |
tgtagaataattcaggggccatgtatccaatggttcctcttgctgctgttaatgaaacaatgct |
10901730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 6 - 147
Target Start/End: Complemental strand, 10993959 - 10993818
Alignment:
| Q |
6 |
cacaatcatcattttctttgccaattttatattctgatctgtgtcattttcaatcgtcacttcccttccatcatgtaatcgatcatatatccaaaaaggg |
105 |
Q |
| |
|
||||||||||||||||||||||||||| || | | |||||||||||| ||||| || ||||| |||||||||||||| ||||||| ||||||||||| |
|
|
| T |
10993959 |
cacaatcatcattttctttgccaatttcatttcttcatctgtgtcattctcaattgttacttcacttccatcatgtaactgatcataaatccaaaaagga |
10993860 |
T |
|
| Q |
106 |
aaataaatttggctagattgctcagccattgcattcaagttc |
147 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
10993859 |
aaataaatttggctagattgctcagctaatgcattcaagttc |
10993818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 86 - 275
Target Start/End: Complemental strand, 9082712 - 9082523
Alignment:
| Q |
86 |
gatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatctccatcaacaacatcccaaa |
185 |
Q |
| |
|
|||||||||||||||| || ||||||| |||||| || ||||| ||| | | |||| ||| |||| | ||||||||||||||||| | ||||||||| |
|
|
| T |
9082712 |
gatcatatatccaaaagggaaaataaagttggcttgaatgctctgccttggtgttcaggtttttcctcttgcttgccatctccatcaaaagcatcccaaa |
9082613 |
T |
|
| Q |
186 |
actatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcaggagccatgtatccaatggtccctcttgctgcagt |
275 |
Q |
| |
|
|||||| |||||||| ||||| || | | || | |||| ||||||||| ||||||||||| |||||||| || |||||||||||||| |
|
|
| T |
9082612 |
actataaacatcagccttgtacgacactccccctatatttttgtagaataactcaggagccatatatccaattgtacctcttgctgcagt |
9082523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 86 - 272
Target Start/End: Complemental strand, 9433010 - 9432824
Alignment:
| Q |
86 |
gatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatctccatcaacaacatcccaaa |
185 |
Q |
| |
|
||||||| |||||||| |||||||||| ||| || || |||||||| || |||||| || || ||||||||||| || || ||||| | ||| ||||| |
|
|
| T |
9433010 |
gatcataaatccaaaaggggaaataaagttgacttgaatgctcagcatgtgaattcaaatttcttcttctacttgcgatttcaatcaaaagcattccaaa |
9432911 |
T |
|
| Q |
186 |
actatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcaggagccatgtatccaatggtccctcttgctgc |
272 |
Q |
| |
|
|||||| ||||| || |||| |||||| | |||| |||| |||||| | ||||||||||||||| ||||| || ||||||||||| |
|
|
| T |
9432910 |
actatacacatcggccttgtgtgatattctcccaatattttggtagaacaattcaggagccatgtaaccaattgttcctcttgctgc |
9432824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 278
Target Start/End: Complemental strand, 9318394 - 9318271
Alignment:
| Q |
155 |
tacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcaggagccatgtatcc |
254 |
Q |
| |
|
|||||||||| |||||||| | ||| ||||| ||||||||||| || ||||| |||| | |||| |||| ||||||| | |||||||||||||||||| |
|
|
| T |
9318394 |
tacttgccatttccatcaaaagcattccaaagctatatacatcggccttgtaggatactcctccaatatttttgtagaacaattcaggagccatgtatcc |
9318295 |
T |
|
| Q |
255 |
aatggtccctcttgctgcagttaa |
278 |
Q |
| |
|
||| || ||||| ||||||||||| |
|
|
| T |
9318294 |
aattgttcctctagctgcagttaa |
9318271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 278
Target Start/End: Original strand, 9319908 - 9320031
Alignment:
| Q |
155 |
tacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcaggagccatgtatcc |
254 |
Q |
| |
|
|||||||||| |||||||| | ||| || || |||||||||||||| ||||| |||| | |||| |||| ||||||| | |||||||||||| ||||| |
|
|
| T |
9319908 |
tacttgccatttccatcaaaagcattccgaagctatatacatcagccttgtaggatactcctccaatatttttgtagaacaattcaggagccatatatcc |
9320007 |
T |
|
| Q |
255 |
aatggtccctcttgctgcagttaa |
278 |
Q |
| |
|
||| || ||||||||||||||||| |
|
|
| T |
9320008 |
aattgttcctcttgctgcagttaa |
9320031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 86 - 349
Target Start/End: Complemental strand, 9453997 - 9453734
Alignment:
| Q |
86 |
gatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatctccatcaacaacatcccaaa |
185 |
Q |
| |
|
||||||| |||||||| |||| ||||| |||||| || |||||||| || |||||| || || || |||||||| || || |||| | ||| ||||| |
|
|
| T |
9453997 |
gatcataaatccaaaaggggatataaagttggcttgaatgctcagcatgtgaattcaaatttctactcctacttgcaatttcaatcagaagcattccaaa |
9453898 |
T |
|
| Q |
186 |
actatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcaggagccatgtatccaatggtccctcttgctgcagttaatgacaca |
285 |
Q |
| |
|
|||||| ||||| || |||| |||||| | |||| |||| |||||| | ||||||||||||||| ||||| || ||||||||||| || || | ||| |
|
|
| T |
9453897 |
actatacacatcggccttgtgtgatattctcccaatattttggtagaacaattcaggagccatgtaaccaattgttcctcttgctgctgtcaaagcgaca |
9453798 |
T |
|
| Q |
286 |
atgcttttatctgtaggacagagtctagcaagtccaaaatcagaaacttttggattgaaatttt |
349 |
Q |
| |
|
||||| || || ||||| | || | ||||| |||||||| |||||||| || ||||||||| |
|
|
| T |
9453797 |
atgctattgtcaataggataaagctttgcaagaccaaaatctgaaactttagggatgaaatttt |
9453734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 272
Target Start/End: Original strand, 9399569 - 9399755
Alignment:
| Q |
86 |
gatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatctccatcaacaacatcccaaa |
185 |
Q |
| |
|
||||||| |||||||| |||||||||| ||| || || |||||||| || |||||| || || || |||||||| || || ||||| | ||| ||||| |
|
|
| T |
9399569 |
gatcataaatccaaaaggggaaataaagttgacttgaatgctcagcatgtgaattcaaatttcttctcctacttgcaatttcaatcaaaagcataccaaa |
9399668 |
T |
|
| Q |
186 |
actatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcaggagccatgtatccaatggtccctcttgctgc |
272 |
Q |
| |
|
||||| |||||||| || || |||||| |||| |||| | |||| ||||||||||||||||| ||||| || ||||||||||| |
|
|
| T |
9399669 |
gctatacacatcagccttatatgatattcccccaatattttggaagaacagttcaggagccatgtaaccaattgttcctcttgctgc |
9399755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 149 - 278
Target Start/End: Original strand, 9384225 - 9384354
Alignment:
| Q |
149 |
tccttctacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcaggagccat |
248 |
Q |
| |
|
||||| ||| |||||| |||||||| | ||| ||||| |||||||||||||| |||||||| | | |||| |||| ||||||| |||||||||||||| |
|
|
| T |
9384225 |
tccttttacctgccatttccatcaaaagcattccaaagctatatacatcagccttgtaagacactccaccaatatttttgtagaacagttcaggagccat |
9384324 |
T |
|
| Q |
249 |
gtatccaatggtccctcttgctgcagttaa |
278 |
Q |
| |
|
||| || | || |||||||| |||||||| |
|
|
| T |
9384325 |
gtaacccaaagttcctcttgccgcagttaa |
9384354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 278
Target Start/End: Complemental strand, 9255132 - 9255009
Alignment:
| Q |
155 |
tacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcaggagccatgtatcc |
254 |
Q |
| |
|
|||||||||| || ||||| | ||| ||||| ||||||||||| || ||||| |||| | |||| |||| |||||| | |||||||||||||||||| |
|
|
| T |
9255132 |
tacttgccatttcaatcaaaagcattccaaagctatatacatcggccttgtacgatactcctccaatattttggtagaacaattcaggagccatgtatcc |
9255033 |
T |
|
| Q |
255 |
aatggtccctcttgctgcagttaa |
278 |
Q |
| |
|
||| ||||| |||||||| ||||| |
|
|
| T |
9255032 |
aattgtcccccttgctgcggttaa |
9255009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 278
Target Start/End: Original strand, 9350225 - 9350348
Alignment:
| Q |
155 |
tacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcaggagccatgtatcc |
254 |
Q |
| |
|
||||||| || |||||||| | ||| || || |||||||||||||| ||||| |||| | |||| |||| ||||||| | ||||||||||| ||||| |
|
|
| T |
9350225 |
tacttgcgatttccatcaaaagcattccgaagctatatacatcagccttgtaggatactcctccaatatttttgtagaacaactcaggagccatatatcc |
9350324 |
T |
|
| Q |
255 |
aatggtccctcttgctgcagttaa |
278 |
Q |
| |
|
||| || ||||||||||||||||| |
|
|
| T |
9350325 |
aattgttcctcttgctgcagttaa |
9350348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 149 - 275
Target Start/End: Original strand, 8999663 - 8999789
Alignment:
| Q |
149 |
tccttctacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcaggagccat |
248 |
Q |
| |
|
||||| ||| ||||||||||||||| | ||||||||| ||||| |||||||| || ||||| | | |||| |||| | ||||| | ||| |||||||| |
|
|
| T |
8999663 |
tccttttacctgccatctccatcaaaagcatcccaaagctataaacatcagccttataagacactcccccaatatttttatagaacaattctggagccat |
8999762 |
T |
|
| Q |
249 |
gtatccaatggtccctcttgctgcagt |
275 |
Q |
| |
|
||||||||||| |||||||| ||||| |
|
|
| T |
8999763 |
atatccaatggtacctcttgccgcagt |
8999789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 159 - 275
Target Start/End: Complemental strand, 9096909 - 9096793
Alignment:
| Q |
159 |
tgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcaggagccatgtatccaatg |
258 |
Q |
| |
|
||||||||||||||| | ||||||||| ||||| ||||||||||| || || | | |||| |||| ||||||| | ||| |||||||| |||||||| |
|
|
| T |
9096909 |
tgccatctccatcaaaagcatcccaaagctataaacatcagctttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaatt |
9096810 |
T |
|
| Q |
259 |
gtccctcttgctgcagt |
275 |
Q |
| |
|
|| |||||||| ||||| |
|
|
| T |
9096809 |
gtacctcttgcagcagt |
9096793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 278
Target Start/End: Complemental strand, 9234159 - 9234040
Alignment:
| Q |
159 |
tgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcaggagccatgtatccaatg |
258 |
Q |
| |
|
|||||| |||||||| | ||| |||||||| ||||||||||||||||| || | | |||| |||| ||||||| | ||||||||||||||| || | |
|
|
| T |
9234159 |
tgccatttccatcaaaagcattccaaaactgtatacatcagctttgtacgacactccaccaatatttttgtagaacaattcaggagccatgtaacccaaa |
9234060 |
T |
|
| Q |
259 |
gtccctcttgctgcagttaa |
278 |
Q |
| |
|
|| |||||||| |||||||| |
|
|
| T |
9234059 |
gttcctcttgccgcagttaa |
9234040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 272
Target Start/End: Complemental strand, 9486362 - 9486176
Alignment:
| Q |
86 |
gatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatctccatcaacaacatcccaaa |
185 |
Q |
| |
|
||||||| |||||||| || || |||| ||| || || |||||||| || |||||| || || |||||||||||||| || ||||| | ||| ||||| |
|
|
| T |
9486362 |
gatcataaatccaaaagggaaagtaaagttgacttgaatgctcagcatgtgtattcaaatttcttcttctacttgccatttcaatcaaaagcattccaaa |
9486263 |
T |
|
| Q |
186 |
actatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcaggagccatgtatccaatggtccctcttgctgc |
272 |
Q |
| |
|
||||| | ||||| ||||| |||||| || | |||| |||||| | ||||||||||||||| || || || ||||||||||| |
|
|
| T |
9486262 |
gctatacatgtcagccttgtatgatattcctccgatattttggtagaacaattcaggagccatgtaaccgattgttcctcttgctgc |
9486176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10932822 - 10932870
Alignment:
| Q |
1 |
aaagacacaatcatcattttctttgccaattttatattctgatctgtgt |
49 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| || | ||||||||||| |
|
|
| T |
10932822 |
aaagccacgatcatcattttctttgccaatttcatttcctgatctgtgt |
10932870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 278
Target Start/End: Complemental strand, 15927300 - 15927177
Alignment:
| Q |
155 |
tacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcaggagccatgtatcc |
254 |
Q |
| |
|
|||||||||| |||||||| | ||| ||||| ||||||||||| || || || || | | |||| |||| ||||||||| |||||||||||||||||| |
|
|
| T |
15927300 |
tacttgccatttccatcaaaagcattccaaagctatatacatcggccttatacgaaactcctccaatatttttgtagaataattcaggagccatgtatcc |
15927201 |
T |
|
| Q |
255 |
aatggtccctcttgctgcagttaa |
278 |
Q |
| |
|
||| || ||||||||||||||||| |
|
|
| T |
15927200 |
aatcgttcctcttgctgcagttaa |
15927177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 278
Target Start/End: Original strand, 9159598 - 9159721
Alignment:
| Q |
155 |
tacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcaggagccatgtatcc |
254 |
Q |
| |
|
|||||||||| |||||||| | ||| ||||||||||| |||||||| ||||| |||| | |||| |||| ||||||| | || |||||||| || || |
|
|
| T |
9159598 |
tacttgccatttccatcaaaagcattccaaaactataaacatcagccttgtatgatactccaccaatatttttgtagaacaactcgggagccatataacc |
9159697 |
T |
|
| Q |
255 |
aatggtccctcttgctgcagttaa |
278 |
Q |
| |
|
||| || ||||||||||||||||| |
|
|
| T |
9159698 |
aattgttcctcttgctgcagttaa |
9159721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 40225245 - 40225281
Alignment:
| Q |
313 |
gcaagtccaaaatcagaaacttttggattgaaatttt |
349 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
40225245 |
gcaagtccaaaatcagagagttttggattgaaatttt |
40225281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University