View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12680_low_13 (Length: 331)

Name: NF12680_low_13
Description: NF12680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12680_low_13
NF12680_low_13
[»] chr4 (20 HSPs)
chr4 (143-261)||(925290-925408)
chr4 (143-261)||(54438311-54438429)
chr4 (143-261)||(40071603-40071721)
chr4 (143-261)||(17493781-17493899)
chr4 (141-261)||(37064907-37065027)
chr4 (143-261)||(20789701-20789819)
chr4 (143-261)||(47199514-47199632)
chr4 (150-261)||(39788028-39788139)
chr4 (143-261)||(32218091-32218209)
chr4 (143-257)||(34408815-34408929)
chr4 (143-242)||(51744657-51744756)
chr4 (143-261)||(21240354-21240472)
chr4 (144-261)||(33800937-33801053)
chr4 (150-261)||(46870642-46870753)
chr4 (178-261)||(52101111-52101194)
chr4 (143-261)||(3172173-3172291)
chr4 (150-261)||(28910310-28910421)
chr4 (141-261)||(53509796-53509916)
chr4 (143-258)||(41555490-41555605)
chr4 (150-222)||(10441179-10441251)
[»] chr6 (12 HSPs)
chr6 (141-261)||(28541741-28541861)
chr6 (143-261)||(13042000-13042118)
chr6 (143-261)||(1241137-1241255)
chr6 (143-261)||(29182619-29182737)
chr6 (143-261)||(30736447-30736565)
chr6 (141-261)||(16435805-16435925)
chr6 (150-261)||(7271232-7271343)
chr6 (143-257)||(12350300-12350414)
chr6 (150-261)||(1870569-1870680)
chr6 (143-257)||(31013653-31013767)
chr6 (167-261)||(13210396-13210490)
chr6 (143-233)||(31833747-31833837)
[»] chr8 (10 HSPs)
chr8 (143-261)||(17493554-17493672)
chr8 (143-261)||(27820801-27820919)
chr8 (143-261)||(38070049-38070167)
chr8 (151-261)||(39906946-39907054)
chr8 (143-261)||(11254528-11254646)
chr8 (143-261)||(18575056-18575174)
chr8 (150-261)||(17336124-17336235)
chr8 (143-261)||(12738520-12738638)
chr8 (141-261)||(13243700-13243820)
chr8 (150-258)||(9753805-9753913)
[»] chr3 (11 HSPs)
chr3 (143-261)||(41346075-41346193)
chr3 (143-261)||(51545690-51545808)
chr3 (143-261)||(54014265-54014383)
chr3 (143-261)||(40496801-40496919)
chr3 (143-261)||(48169752-48169870)
chr3 (143-261)||(50676503-50676620)
chr3 (143-254)||(12568169-12568280)
chr3 (143-254)||(13544633-13544744)
chr3 (143-258)||(24709038-24709153)
chr3 (150-261)||(48737561-48737672)
chr3 (143-222)||(30459834-30459913)
[»] chr2 (13 HSPs)
chr2 (143-261)||(45080572-45080690)
chr2 (143-261)||(2110248-2110366)
chr2 (143-261)||(28585837-28585955)
chr2 (143-261)||(43370702-43370820)
chr2 (143-261)||(29194016-29194134)
chr2 (143-261)||(4828243-4828361)
chr2 (143-261)||(8381470-8381588)
chr2 (152-261)||(1779226-1779335)
chr2 (143-261)||(42847061-42847179)
chr2 (150-261)||(39646480-39646591)
chr2 (166-244)||(16964867-16964945)
chr2 (143-222)||(31922032-31922111)
chr2 (198-261)||(43377360-43377423)
[»] chr5 (6 HSPs)
chr5 (1-106)||(29069988-29070093)
chr5 (148-261)||(42897528-42897641)
chr5 (143-261)||(36982214-36982332)
chr5 (143-261)||(14044084-14044202)
chr5 (143-261)||(2970819-2970936)
chr5 (143-222)||(33403222-33403301)
[»] chr7 (12 HSPs)
chr7 (143-258)||(41427805-41427920)
chr7 (143-261)||(6392299-6392417)
chr7 (143-261)||(29737433-29737551)
chr7 (143-261)||(40232269-40232387)
chr7 (143-261)||(4040975-4041093)
chr7 (143-258)||(24300301-24300416)
chr7 (143-261)||(25943801-25943917)
chr7 (143-258)||(27596243-27596357)
chr7 (143-258)||(31689510-31689625)
chr7 (143-261)||(38276699-38276817)
chr7 (150-261)||(48838095-48838206)
chr7 (143-261)||(21442952-21443070)
[»] chr1 (13 HSPs)
chr1 (143-261)||(28036855-28036973)
chr1 (143-261)||(1929370-1929488)
chr1 (143-261)||(32045861-32045979)
chr1 (143-261)||(39151051-39151169)
chr1 (143-261)||(46862584-46862702)
chr1 (143-261)||(38321673-38321791)
chr1 (143-261)||(46370955-46371072)
chr1 (141-261)||(50777023-50777143)
chr1 (143-258)||(8229091-8229206)
chr1 (143-258)||(38817802-38817917)
chr1 (143-257)||(40562592-40562706)
chr1 (143-261)||(9129556-9129674)
chr1 (143-261)||(1207606-1207722)
[»] scaffold0318 (1 HSPs)
scaffold0318 (143-258)||(16385-16500)
[»] scaffold0061 (1 HSPs)
scaffold0061 (143-261)||(10171-10289)
[»] scaffold0519 (1 HSPs)
scaffold0519 (143-261)||(10747-10865)
[»] scaffold0532 (1 HSPs)
scaffold0532 (143-261)||(3842-3960)
[»] scaffold0047 (1 HSPs)
scaffold0047 (143-261)||(69781-69899)
[»] scaffold1194 (1 HSPs)
scaffold1194 (143-261)||(1007-1125)


Alignment Details
Target: chr4 (Bit Score: 111; Significance: 5e-56; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 925408 - 925290
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  925408 tatttgtaaaaaatatttatcctacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccat 925309  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  925308 gttaaagtttgtagtggaa 925290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 54438429 - 54438311
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  54438429 tatttgtaaaaaatatttgtcccacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccat 54438330  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  54438329 gttaaagtttgtagtggaa 54438311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 40071721 - 40071603
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40071721 tatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccat 40071622  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  40071621 gttaaagtttgtagtggaa 40071603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 17493781 - 17493899
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  17493781 tatttgtaaaaaatatttgtctcacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaaaactttttgtggtccccat 17493880  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  17493881 gttaaagtttgtagtggaa 17493899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 37065027 - 37064907
Alignment:
Q  141 cttatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcacc 240  Q
    |||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |    
T  37065027 cttatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacatatttaccccttataaatactttttgtggtcctc 37064928  T
Q  241 atgttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||||    
T  37064927 atgttaaagtttgtagtggaa 37064907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 20789701 - 20789819
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| | ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||    
T  20789701 tatttgtaaaaaatatttgtcccataatacttgatcttctcagatttctaagtaaaatttgacagatttatcccttataaatactttttgtggtccccat 20789800  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  20789801 gttaaagtttgtagtggaa 20789819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 47199514 - 47199632
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| ||||||||||| ||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||| ||||    
T  47199514 tatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaggcaaaatttaacagatttaccccatataaatactttttgtggtccccat 47199613  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  47199614 gttaaagtttgtagtggaa 47199632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 39788028 - 39788139
Alignment:
Q  150 aaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccatgttaaag 249  Q
    ||||||||||| | | ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39788028 aaaaaatatttgttccacaatacttgaccttatcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccatgttaaag 39788127  T
Q  250 tttgtagtggaa 261  Q
    ||||||||||||    
T  39788128 tttgtagtggaa 39788139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 32218209 - 32218091
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||| ||||||||||| ||||| |||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||  ||||    
T  32218209 tatttgaaaaaaatatttgtcctataatacttgattttctcagatttttaagcagaatttgacagatttaccccttataaatactttttgtggttcccat 32218110  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  32218109 gttaaagtttgtagtggaa 32218091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 143 - 257
Target Start/End: Complemental strand, 34408929 - 34408815
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| | ||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||  |||    
T  34408929 tatttgtaaaaaatatttgtcccataatacttgaccttctcagatttctaggtaaaatttgacagatttaccccttataaatactttttgtggtccacat 34408830  T
Q  243 gttaaagtttgtagt 257  Q
    |||||||||||||||    
T  34408829 gttaaagtttgtagt 34408815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 143 - 242
Target Start/End: Complemental strand, 51744756 - 51744657
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  51744756 tatttgtaaaaaatatttgtcccacaatacttgaccttctcaaatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccat 51744657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 21240354 - 21240472
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||| ||||||||||| ||| | ||||||||| ||||||||| ||||||| | ||||||||||||||||||| |||||||||||||||||||| ||||    
T  21240354 tatttgaaaaaaatatttgtcccataatacttgaccttctcagacttctaagtagaatttgacagatttaccccatataaatactttttgtggtccccat 21240453  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  21240454 gttaaagtttgtagtggaa 21240472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 144 - 261
Target Start/End: Complemental strand, 33801053 - 33800937
Alignment:
Q  144 atttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccatg 243  Q
    ||||||||||||||||| | ||| ||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||| ||||     
T  33801053 atttgtaaaaaatatttgttctataatacttgaccttctcagatttctaagtaaaatttgacagatttacctcttataaatac-ttttgtggtccccata 33800955  T
Q  244 ttaaagtttgtagtggaa 261  Q
    ||||||||||||||||||    
T  33800954 ttaaagtttgtagtggaa 33800937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 46870642 - 46870753
Alignment:
Q  150 aaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccatgttaaag 249  Q
    ||||||||||| ||| ||||||||||| || ||||||||| |||| | ||||||||| ||||| |||||||||||||||||||||||| |||||| ||||    
T  46870642 aaaaaatatttgtcccacaatacttgacctgctcagatttttaagtacaatttgacaaatttatcccttataaatactttttgtggtccccatgtaaaag 46870741  T
Q  250 tttgtagtggaa 261  Q
    ||||||||||||    
T  46870742 tttgtagtggaa 46870753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 52101111 - 52101194
Alignment:
Q  178 cttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccatgttaaagtttgtagtggaa 261  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||    
T  52101111 cttctcagatttataagcaaaatttgacagatttaccctttataaatactttttgtggttcccatgttaaagtttgtagtggaa 52101194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 3172291 - 3172173
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||| ||||||||||| ||| |||||||||||  |||||| ||||||||||| ||||||||| |||||||  ||||||||||||||||||||| | ||    
T  3172291 tatttgaaaaaaatatttgtcccacaatacttgactttctcaaatttctaagcagaatttgacaaatttaccttttataaatactttttgtggtctcaat 3172192  T
Q  243 gttaaagtttgtagtggaa 261  Q
    || ||||||||||||||||    
T  3172191 gtaaaagtttgtagtggaa 3172173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 28910421 - 28910310
Alignment:
Q  150 aaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccatgttaaag 249  Q
    ||||||||||| | ||||| || || | |||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||  |||||| ||||    
T  28910421 aaaaaatatttgttctacagtatttaaccttctcagatttttaagcagaatttgacaaatttaccccttataaatactttttgtggtttccatgtaaaag 28910322  T
Q  250 tttgtagtggaa 261  Q
    ||| ||||||||    
T  28910321 tttctagtggaa 28910310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 53509916 - 53509796
Alignment:
Q  141 cttatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcacc 240  Q
    |||||||  ||||||||||| | | |||||| |||| ||| ||||||||||||| | ||||||||| |||||  |||||||||||||||||||| || ||    
T  53509916 cttatttagaaaaaatatttgttccacaatatttgaccttatcagatttctaaggagaatttgacatatttattccttataaatactttttgtgatcccc 53509817  T
Q  241 atgttaaagtttgtagtggaa 261  Q
    |||||||| ||||||||||||    
T  53509816 atgttaaaatttgtagtggaa 53509796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 143 - 258
Target Start/End: Original strand, 41555490 - 41555605
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||| |||||| |||| |||  ||||| |||| ||||||| |||| |||||  |||||||||  |||||||||||||  |||||||||||||| | ||    
T  41555490 tatttggaaaaaaaatttgtcccgcaataattgaccttctcaaatttttaagcttaatttgacaagtttaccccttatagttactttttgtggtctctat 41555589  T
Q  243 gttaaagtttgtagtg 258  Q
    || |||||||||||||    
T  41555590 gtaaaagtttgtagtg 41555605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 10441179 - 10441251
Alignment:
Q  150 aaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataa 222  Q
    |||||| |||| ||| | ||||||||| ||||||| ||||  |||||||||||||||  |||||| |||||||    
T  10441179 aaaaaaaatttgtcccaaaatacttgaccttctcaaattttaaagcaaaatttgacaattttacctcttataa 10441251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 28541861 - 28541741
Alignment:
Q  141 cttatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcacc 240  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  28541861 cttatttgtaaaaaatatttatcccacaatacttgaccttctcagatttctaggcaaaatttgacagatttaccccttataaatactttttgtggtcccc 28541762  T
Q  241 atgttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||||    
T  28541761 atgttaaagtttgtagtggaa 28541741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 13042000 - 13042118
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  13042000 tatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttttaagcaaaatttgacagatttaccccttataaatactttttgtggtccctat 13042099  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  13042100 gttaaagtttgtagtggaa 13042118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 1241137 - 1241255
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  1241137 tatttgtaaaaaatatttgtcccacaatacttgaacttctcagatttctaagcaaaatttgacagatttacctcttataaatactttttgtggtccccat 1241236  T
Q  243 gttaaagtttgtagtggaa 261  Q
     |||||||||| |||||||    
T  1241237 attaaagtttgcagtggaa 1241255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 29182619 - 29182737
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||| | ||    
T  29182619 tatttgtaaaaaatatttgtcctacaatacttgaccttctcagatttctaggcaaaatttgacagatttacctcttataaatacattttgtggtccctat 29182718  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  29182719 gttaaagtttgtagtggaa 29182737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 30736447 - 30736565
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||| ||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||    
T  30736447 tatttgaaaaaaatatttgtcccacaatatttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtaatccccat 30736546  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||| ||||    
T  30736547 gttaaagtttgtagaggaa 30736565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 141 - 261
Target Start/End: Original strand, 16435805 - 16435925
Alignment:
Q  141 cttatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcacc 240  Q
    |||||||||||||||||||| ||| ||||||||||| ||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||   |    
T  16435805 cttatttgtaaaaaatatttgtcccacaatacttgaccttctcaaatttctaaggaaaatttgacagatttaccccatataaatactttttgtggttctc 16435904  T
Q  241 atgttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||||    
T  16435905 atgttaaagtttgtagtggaa 16435925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 7271343 - 7271232
Alignment:
Q  150 aaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccatgttaaag 249  Q
    ||||||||||| ||| | ||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  7271343 aaaaaatatttgtcccataatacttgaccttcttagatttctaagcagaatttgacagatttaccccttataaatactttttgttgtccccatgttaaag 7271244  T
Q  250 tttgtagtggaa 261  Q
    ||||||||||||    
T  7271243 tttgtagtggaa 7271232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 143 - 257
Target Start/End: Original strand, 12350300 - 12350414
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||| ||||| ||| |||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||  |||    
T  12350300 tatttgtaaaaagtatttgtcccacaatatttgaccttctcaaatttctaagcaaaatttgacagatttaccccttatatatactttttgtggtcctcat 12350399  T
Q  243 gttaaagtttgtagt 257  Q
    |||||||||||||||    
T  12350400 gttaaagtttgtagt 12350414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 1870569 - 1870680
Alignment:
Q  150 aaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccatgttaaag 249  Q
    ||||||||||| | | ||||||||||| |||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||| || |||||| ||||    
T  1870569 aaaaaatatttgttcaacaatacttgaccttctcagatttttaagcagaatttgacaaatttaccccttataaatactttttgtgatctccatgtaaaag 1870668  T
Q  250 tttgtagtggaa 261  Q
    ||||||||||||    
T  1870669 tttgtagtggaa 1870680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 143 - 257
Target Start/End: Complemental strand, 31013767 - 31013653
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||| ||||||||||| | | ||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||| ||||||||| | ||||    
T  31013767 tatttgaaaaaaatatttgttccacaatacttgatcttctcagatttctaagcagaatttgacggatttatcccttataaatattttttgtggcccccat 31013668  T
Q  243 gttaaagtttgtagt 257  Q
     ||||||||||||||    
T  31013667 attaaagtttgtagt 31013653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 167 - 261
Target Start/End: Original strand, 13210396 - 13210490
Alignment:
Q  167 caatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccatgttaaagtttgtagtggaa 261  Q
    |||||||||| ||||||| |||| |||||| ||||||||| |||||||| ||||||||| ||||||||||| |||||| ||||||||||||||||    
T  13210396 caatacttgaccttctcaaatttttaagcagaatttgacaaatttacccattataaatattttttgtggtctccatgtaaaagtttgtagtggaa 13210490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 143 - 233
Target Start/End: Complemental strand, 31833837 - 31833747
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgt 233  Q
    |||||| ||||||||||| ||| || |||||||| |||||||||||| |||||| ||||||||| ||||| |||||| |||||||||||||    
T  31833837 tatttgaaaaaaatatttgtcccacgatacttgaccttctcagatttttaagcataatttgacaaatttatcccttaaaaatactttttgt 31833747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 17493554 - 17493672
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17493554 tatttgtaaaaaatatttgtcccacaatacttgatcttctcagatttctaaacaaaatttgacagatttaccccttataaatactttttgtggtccccat 17493653  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  17493654 gttaaagtttgtagtggaa 17493672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 27820801 - 27820919
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27820801 tatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccat 27820900  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||| ||||||||||||    
T  27820901 gttaaaatttgtagtggaa 27820919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 38070167 - 38070049
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| ||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  38070167 tatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaggcaaaatttgacagatttacccattataaatactttttgtggtccccat 38070068  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  38070067 gttaaagtttgtagtggaa 38070049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 151 - 261
Target Start/End: Original strand, 39906946 - 39907054
Alignment:
Q  151 aaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccatgttaaagt 250  Q
    |||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  39906946 aaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggt--ccatgttaaagt 39907043  T
Q  251 ttgtagtggaa 261  Q
    |||||||||||    
T  39907044 ttgtagtggaa 39907054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 11254528 - 11254646
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    ||||||||||||| | || ||| ||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  11254528 tatttgtaaaaaaaaattgtcccacaatacttgaccttatcagatttctaagcaaaatttgacagatttaccctttataaatactttttgtggtccccat 11254627  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  11254628 gttaaagtttgtagtggaa 11254646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 18575056 - 18575174
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    ||||||||||||| | || ||| |||||||| || ||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| ||||    
T  18575056 tatttgtaaaaaaaaattgtcccacaatactcgaccttctcagatttctaagcaaaatttgacaaatttatctcttataaatactttttgtggtccccat 18575155  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  18575156 gttaaagtttgtagtggaa 18575174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 17336235 - 17336124
Alignment:
Q  150 aaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccatgttaaag 249  Q
    ||||||||||| ||| | ||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  17336235 aaaaaatatttgtcccataatacttgaccttcttagatttctaagcagaatttgacagatttaccccttataaatactttttgtggttcccatgttaaag 17336136  T
Q  250 tttgtagtggaa 261  Q
    ||| ||||||||    
T  17336135 tttctagtggaa 17336124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 12738638 - 12738520
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||| ||||||||||| ||| | ||||||||| ||| ||||||||||||||| ||||||||| |||||||||||||||||| |||||||| || ||||    
T  12738638 tatttggaaaaaatatttgtcccataatacttgaccttatcagatttctaagcagaatttgacaaatttaccccttataaatattttttgtgatccccat 12738539  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  12738538 gttaaagtttgtagtggaa 12738520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 13243820 - 13243700
Alignment:
Q  141 cttatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcacc 240  Q
    |||||||| ||||||||| | ||  |||||| |||| ||||||| ||||||||||| ||||||||| ||| |||||||||||||||||||||||||| |     
T  13243820 cttatttggaaaaaatatatgtctcacaatatttgaccttctcaaatttctaagcagaatttgacaaattcaccccttataaatactttttgtggtctca 13243721  T
Q  241 atgttaaagtttgtagtggaa 261  Q
    |||| ||||||||||||||||    
T  13243720 atgtaaaagtttgtagtggaa 13243700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 150 - 258
Target Start/End: Original strand, 9753805 - 9753913
Alignment:
Q  150 aaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccatgttaaag 249  Q
    ||||||||||| ||| | ||||||||| ||||||| ||||||||||| ||||||||| ||||||| |||||||||| ||||||||||| | |||| ||||    
T  9753805 aaaaaatatttgtcccataatacttgaccttctcaaatttctaagcagaatttgacaaatttacctcttataaatattttttgtggtctcaatgtaaaag 9753904  T
Q  250 tttgtagtg 258  Q
    |||||||||    
T  9753905 tttgtagtg 9753913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 41346075 - 41346193
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41346075 tatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccat 41346174  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  41346175 gttaaagtttgtagtggaa 41346193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 51545690 - 51545808
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  51545690 tatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccat 51545789  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  51545790 gttaaagtttgtagtggaa 51545808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 54014265 - 54014383
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  54014265 tatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccat 54014364  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  54014365 gttaaagtttgtagtggaa 54014383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 40496801 - 40496919
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40496801 tatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaaacaaaatttgacagatttaccccttataaatactttttgtggtccccat 40496900  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  40496901 gttaaagtttgtagtggaa 40496919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 48169752 - 48169870
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| | ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  48169752 tatttgtaaaaaatatttgtcccataatacttgaccttctcagatttctaagcaaaatttgacagatttatcccttataaatactttttgtggtccccat 48169851  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  48169852 gttaaagtttgtagtggaa 48169870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 50676503 - 50676620
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50676503 tatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttttaagcaaaatttgacagatttaccccttataaatactttttgtggtc-ccat 50676601  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  50676602 gttaaagtttgtagtggaa 50676620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 143 - 254
Target Start/End: Complemental strand, 12568280 - 12568169
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12568280 tatttgtaaaaaatatttgtcccacaatacttgactttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccat 12568181  T
Q  243 gttaaagtttgt 254  Q
    ||||||||||||    
T  12568180 gttaaagtttgt 12568169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 143 - 254
Target Start/End: Complemental strand, 13544744 - 13544633
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13544744 tatttgtaaaaaatatttgtcccacaatacttgactttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccat 13544645  T
Q  243 gttaaagtttgt 254  Q
    ||||||||||||    
T  13544644 gttaaagtttgt 13544633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 143 - 258
Target Start/End: Original strand, 24709038 - 24709153
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| ||||||||||| |||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||  |||    
T  24709038 tatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttataagcaaaatttgacagatttatcctttataaatactttttgtggtcctcat 24709137  T
Q  243 gttaaagtttgtagtg 258  Q
    ||||||||||||||||    
T  24709138 gttaaagtttgtagtg 24709153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 48737561 - 48737672
Alignment:
Q  150 aaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccatgttaaag 249  Q
    ||||||||||| || || ||||||||||||| |||||||| |||||| ||||||||| |||||||| ||||||||||||||||||||| |||||||||||    
T  48737561 aaaaaatatttgtcttataatacttgatcttttcagatttttaagcagaatttgacaaatttaccctttataaatactttttgtggtccccatgttaaag 48737660  T
Q  250 tttgtagtggaa 261  Q
    ||||||||||||    
T  48737661 tttgtagtggaa 48737672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 30459834 - 30459913
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataa 222  Q
    ||||||||||||| | || |||   ||||||||| ||||||| ||||  |||||||||||||||  ||||||||||||||    
T  30459834 tatttgtaaaaaaaaattgtccctaaatacttgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 30459913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 45080690 - 45080572
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45080690 tatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccat 45080591  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  45080590 gttaaagtttgtagtggaa 45080572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 2110248 - 2110366
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2110248 tatttgtaaaaaatatttgtcccacaatacttgaccttatcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccat 2110347  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  2110348 gttaaagtttgtagtggaa 2110366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 28585955 - 28585837
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  28585955 tatttgtaaaaaatatttatcccacaatacttaaccttctcagatttctaagcaaaatttgacagatttaccctttataaatactttttgtggtccccat 28585856  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  28585855 gttaaagtttgtagtggaa 28585837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 43370702 - 43370820
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43370702 tatttgtaaaaaatatttgtcccacaatacttgaccttcttagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccat 43370801  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  43370802 gttaaagtttgtagtggaa 43370820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 29194016 - 29194134
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    ||||||||||||| || | ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  29194016 tatttgtaaaaaaaatgtgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcccgat 29194115  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  29194116 gttaaagtttgtagtggaa 29194134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 4828361 - 4828243
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| |||||| |||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  4828361 tatttgtaaaaaatatttgtcccacaatatttgaccttctcaaatttctaagcaaaatttgacaaatttaccccttataaatactttttgtggtccccat 4828262  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||| ||||||||    
T  4828261 gttaaagtttatagtggaa 4828243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 8381588 - 8381470
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| || |||||||| ||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||  |||    
T  8381588 tatttgtaaaaaatatttgtcccacgatacttgaccttctcaaatttctaaataaaatttgacagatttaccccttataaatactttttgtggtcttcat 8381489  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||| ||||||||||||    
T  8381488 gttaaaatttgtagtggaa 8381470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 152 - 261
Target Start/End: Complemental strand, 1779335 - 1779226
Alignment:
Q  152 aaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccatgttaaagtt 251  Q
    ||||||||| ||| ||||| | ||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||| |||||||||||||    
T  1779335 aaaatatttgtcccacaatgcctgatcttctcagatttctaagcagaatttaacagatttaccctttataaatactttttgtggtccccatgttaaagtt 1779236  T
Q  252 tgtagtggaa 261  Q
    ||||||||||    
T  1779235 tgtagtggaa 1779226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 42847179 - 42847061
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||| ||||||||||| ||| | ||||||||| ||| |||||||| |||||| ||||||||| ||||||||||||||||||||||||||| || ||||    
T  42847179 tatttgaaaaaaatatttgtcccataatacttgaccttttcagatttttaagcagaatttgacaaatttaccccttataaatactttttgtgttctccat 42847080  T
Q  243 gttaaagtttgtagtggaa 261  Q
    || |||||||||| |||||    
T  42847079 gtaaaagtttgtaatggaa 42847061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 39646591 - 39646480
Alignment:
Q  150 aaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccatgttaaag 249  Q
    ||||||||||| ||| |||||| ||||  |||||||||||||||  | ||||||||| ||||||||||||||||||||||||||||||  ||||| ||||    
T  39646591 aaaaaatatttgtcccacaatatttgacattctcagatttctaaatagaatttgacaaatttaccccttataaatactttttgtggtcctcatgtaaaag 39646492  T
Q  250 tttgtagtggaa 261  Q
    ||||||||||||    
T  39646491 tttgtagtggaa 39646480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 166 - 244
Target Start/End: Original strand, 16964867 - 16964945
Alignment:
Q  166 acaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccatgt 244  Q
    ||||||||||| ||||||| |||| |||| |||||||||||  ||||||||||||||||||||||||||||| ||||||    
T  16964867 acaatacttgaccttctcaaatttttaagtaaaatttgacaagtttaccccttataaatactttttgtggtctccatgt 16964945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 31922111 - 31922032
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataa 222  Q
    ||||||||||||| | || ||| | ||||||||| ||||||| ||||  |||||||||||||||  ||||||||||||||    
T  31922111 tatttgtaaaaaaaaattgtcccaaaatacttgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 31922032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 261
Target Start/End: Complemental strand, 43377423 - 43377360
Alignment:
Q  198 aatttgacagatttaccccttataaatactttttgtggtcaccatgttaaagtttgtagtggaa 261  Q
    ||||||||| ||||| | |||||||||||||||||| ||| ||| || ||||||||||||||||    
T  43377423 aatttgacaaatttatctcttataaatactttttgtagtctccaagtaaaagtttgtagtggaa 43377360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 29069988 - 29070093
Alignment:
Q  1 ccaagacttaccgtatctcctatggtaatctaccttcttacgcatgtgcccaacttgagttctcatttttcaagacaaatttacactattaacaaggata 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29069988 ccaagacttaccgtatctcttatggtaatctaccttcttacgcatgtgcccaacttgagttctcatttttcaagacaaatttacactattaacaaggata 29070087  T
Q  101 tgtttg 106  Q
    ||||||    
T  29070088 tgtttg 29070093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 148 - 261
Target Start/End: Complemental strand, 42897641 - 42897528
Alignment:
Q  148 gtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccatgttaa 247  Q
    ||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  42897641 gtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccatgttaa 42897542  T
Q  248 agtttgtagtggaa 261  Q
    ||||||||||||||    
T  42897541 agtttgtagtggaa 42897528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 36982214 - 36982332
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| ||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36982214 tatttgtaaaaaatatttgtcccacaatacttgaccttctcatatttctaggcaaaatttgacagatttaccccttataaatactttttgtggtccccat 36982313  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  36982314 gttaaagtttgtagtggaa 36982332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 14044084 - 14044202
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| | |||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  14044084 tatttgtaaaaaatatttgtcccataatatttgaccttctcagatttctaagcaaaatttgacagatttacctcttataaatactttttgtggtccccat 14044183  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  14044184 gttaaagtttgtagtggaa 14044202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 2970936 - 2970819
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||| ||||||||||| ||| |||||||||||  |||||| ||||||||||| ||||||||| ||||||||| |||||||||||||||||||| | ||    
T  2970936 tatttgaaaaaaatatttgtcccacaatacttgacattctcaaatttctaagcagaatttgacaaatttaccccgtataaatactttttgtggtctcaat 2970837  T
Q  243 gttaaagtttgtagtggaa 261  Q
    | |||||||||||||||||    
T  2970836 g-taaagtttgtagtggaa 2970819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 33403222 - 33403301
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataa 222  Q
    ||||||||||||| | || ||||| ||||||||| ||||||| ||||  |||||||||||||||  ||||||||||||||    
T  33403222 tatttgtaaaaaaaaattgtcctaaaatacttgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 33403301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 143 - 258
Target Start/End: Complemental strand, 41427920 - 41427805
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41427920 tatttgtaaaaaatatttgtcccacaatatttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccat 41427821  T
Q  243 gttaaagtttgtagtg 258  Q
    ||||||||||||||||    
T  41427820 gttaaagtttgtagtg 41427805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 6392299 - 6392417
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6392299 tatttgtaaaaaatatttgtcccacaatactttaccttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccat 6392398  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  6392399 gttaaagtttgtagtggaa 6392417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 29737433 - 29737551
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29737433 tatttgtaaaaaatatttgtcccacaatacttgaccttcttagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccat 29737532  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  29737533 gttaaagtttgtagtggaa 29737551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 40232387 - 40232269
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40232387 tatttgtaaaaaatatttgtcccacaatacttgaccttctcaaatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccat 40232288  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  40232287 gttaaagtttgtagtggaa 40232269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 4040975 - 4041093
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||    
T  4040975 tatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacggatttaccccttataaatacttgttgtggtccccat 4041074  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  4041075 gttaaagtttgtagtggaa 4041093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 143 - 258
Target Start/End: Complemental strand, 24300416 - 24300301
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| ||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24300416 tatttgtaaaaaatatttgtcccacaatacttgaccttatcaaatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccat 24300317  T
Q  243 gttaaagtttgtagtg 258  Q
    ||||||||||||||||    
T  24300316 gttaaagtttgtagtg 24300301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 25943917 - 25943801
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||| ||||    
T  25943917 tatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatac--tttatggtccccat 25943820  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  25943819 gttaaagtttgtagtggaa 25943801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 143 - 258
Target Start/End: Complemental strand, 27596357 - 27596243
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| ||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  27596357 tatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaggcaaaatttgacagatttaccctttataaatactttttgtggtc-ccat 27596259  T
Q  243 gttaaagtttgtagtg 258  Q
    ||||||||||||||||    
T  27596258 gttaaagtttgtagtg 27596243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 143 - 258
Target Start/End: Complemental strand, 31689625 - 31689510
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||| | ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||    
T  31689625 tatttgtaaaaaatatctgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttatatatactttttgtggtcctcat 31689526  T
Q  243 gttaaagtttgtagtg 258  Q
    |||||||||| |||||    
T  31689525 gttaaagtttatagtg 31689510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 38276817 - 38276699
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||| ||||||||||| ||| ||||||||||| ||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||    
T  38276817 tatttgaaaaaaatatttgtcccacaatacttgaccttttcatatttctaagcagaatttgacagatttaccccttataaatactttttgtggtcctcat 38276718  T
Q  243 gttaaagtttgtagtggaa 261  Q
     ||||||||||||||||||    
T  38276717 attaaagtttgtagtggaa 38276699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 48838095 - 48838206
Alignment:
Q  150 aaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccatgttaaag 249  Q
    ||||||||||| ||| |||||||||||  ||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||| |||||| ||||    
T  48838095 aaaaaatatttgtcccacaatacttgactttctcagatttttaagcagaatttgacaaatttaccccttataaatactttttgtggtctccatgtaaaag 48838194  T
Q  250 tttgtagtggaa 261  Q
    | ||||||||||    
T  48838195 tgtgtagtggaa 48838206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 21443070 - 21442952
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||| ||||||||||| ||| ||||||||||| |||||||||||| |||| | ||||||||| ||||| |||||||||||||||||||||||| ||||    
T  21443070 tatttgaaaaaaatatttgtcccacaatacttgaccttctcagatttttaagtagaatttgacaaatttatcccttataaatactttttgtggtctccat 21442971  T
Q  243 gttaaagtttgtagtggaa 261  Q
    || |||||||| |||||||    
T  21442970 gtaaaagtttgcagtggaa 21442952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 8e-49; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 28036973 - 28036855
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  28036973 tatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttatcccttataaatactttttgtggtccccat 28036874  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  28036873 gttaaagtttgtagtggaa 28036855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 1929488 - 1929370
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  1929488 tatttgtaaaaaatatttgtcccacaatacttgaccttctcatatttctaagcaaaatttgacagatttaccccttataaatattttttgtggtccccat 1929389  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  1929388 gttaaagtttgtagtggaa 1929370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 32045861 - 32045979
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| | | ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  32045861 tatttgtaaaaaatatttgttccacaatacttgaccttctcagatttctaagcaaaatttgaaagatttaccccttataaatactttttgtggtccccat 32045960  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  32045961 gttaaagtttgtagtggaa 32045979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 39151169 - 39151051
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  39151169 tatttgtaaaaaatatttgtcccacaatacttgaccttcttagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcctcat 39151070  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  39151069 gttaaagtttgtagtggaa 39151051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 46862584 - 46862702
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  46862584 tatttgtaaaaaatatttgtcccacaatacttgaccttcttagatttttaagcaaaatttgacagatttaccccttataaatactttttgtggtccccat 46862683  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  46862684 gttaaagtttgtagtggaa 46862702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 38321673 - 38321791
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||| ||||    
T  38321673 tatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttaaaagatttaacccttataaatactttttgtggtccccat 38321772  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  38321773 gttaaagtttgtagtggaa 38321791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 46370955 - 46371072
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  46370955 tatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacaaatttaccccttataaatactttttgtggtc-ccat 46371053  T
Q  243 gttaaagtttgtagtggaa 261  Q
     ||||||||||||||||||    
T  46371054 attaaagtttgtagtggaa 46371072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 141 - 261
Target Start/End: Original strand, 50777023 - 50777143
Alignment:
Q  141 cttatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcacc 240  Q
    |||||||||||||||||||| ||| | ||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  50777023 cttatttgtaaaaaatatttgtcccataatacttgaccttcttaaatttctaagcaaaatttgacagatttaccccttataaatactttttggggtcccc 50777122  T
Q  241 atgttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||||    
T  50777123 atgttaaagtttgtagtggaa 50777143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 143 - 258
Target Start/End: Original strand, 8229091 - 8229206
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    ||||| |||||||||||| | |  |||||||| | ||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  8229091 tatttataaaaaatatttgttcctcaatacttaaccttcttagatttttaagcaaaatttgacaaatttaccccttataaatactttttgtggtccccat 8229190  T
Q  243 gttaaagtttgtagtg 258  Q
    ||||||||||||||||    
T  8229191 gttaaagtttgtagtg 8229206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 143 - 258
Target Start/End: Original strand, 38817802 - 38817917
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||| ||||||||||| ||| | |||| ||||  |||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||    
T  38817802 tatttgaaaaaaatatttgtcccataatatttgactttctcaaatttctaagcaaaatttgataaatttaccccttataaatactttttgtggtccccat 38817901  T
Q  243 gttaaagtttgtagtg 258  Q
    || |||||||||||||    
T  38817902 gtaaaagtttgtagtg 38817917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 143 - 257
Target Start/End: Complemental strand, 40562706 - 40562592
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||| ||||||||||| ||| |||||||||||  |||||| |||| |||||| ||||||| | |||||||||||||||||||| ||||||||| ||||    
T  40562706 tatttgaaaaaaatatttgtcccacaatacttgacattctcatatttttaagcagaatttgataaatttaccccttataaatactctttgtggtctccat 40562607  T
Q  243 gttaaagtttgtagt 257  Q
    || ||||||||||||    
T  40562606 gtaaaagtttgtagt 40562592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 9129674 - 9129556
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||| ||||||||||||||  | |||| || | |||||||||||| |||||| ||||||| | |||||||||||||||||| ||||||||||| ||||    
T  9129674 tatttgaaaaaaatatttatctcataatattttaccttctcagatttttaagcagaatttgataaatttaccccttataaatattttttgtggtctccat 9129575  T
Q  243 gttaaagtttgtagtggaa 261  Q
    || ||| ||||||||||||    
T  9129574 gtaaaattttgtagtggaa 9129556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 1207722 - 1207606
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcacc-a 241  Q
    |||||| ||||||||||| || || ||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||   |||| || |    
T  1207722 tatttgaaaaaaatatttgtcttataatacttgaccttctcagatttctaagcagaatttgacagattta-cccttataaatactttt--gggtccccta 1207626  T
Q  242 tgttaaagtttgtagtggaa 261  Q
    ||||||||||||||| ||||    
T  1207625 tgttaaagtttgtagaggaa 1207606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 143 - 258
Target Start/End: Original strand, 16385 - 16500
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| ||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  16385 tatttgtaaaaaatatttgtcccacaatacttgaccttctcaaatttctaagcaaaatttgacagatttaccctttataaatactttttgtggtccccat 16484  T
Q  243 gttaaagtttgtagtg 258  Q
    ||||||||||||||||    
T  16485 gttaaagtttgtagtg 16500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 10289 - 10171
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| ||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  10289 tatttgtaaaaaatatttgtcccacaatacttgaccttctcatatttctaagcaaaatttgacagatttatcccttataaatactttttgtggtccccat 10190  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||| ||||||||    
T  10189 gttaaagtttatagtggaa 10171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 10865 - 10747
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    ||||||||||||| | || ||| ||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  10865 tatttgtaaaaaaaaattgtcccacaatacttgaccttatcagatttctaagcaaaatttgacagatttaccctttataaatactttttgtggtccccat 10766  T
Q  243 gttaaagtttgtagtggaa 261  Q
    |||||||||||||||||||    
T  10765 gttaaagtttgtagtggaa 10747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 3842 - 3960
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| | ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||  |||    
T  3842 tatttgtaaaaaatatttgtcccataatacttgaccttctcagatttctaagcaaaatttgacagatttacctcttataaatactttttgcggtcctcat 3941  T
Q  243 gttaaagtttgtagtggaa 261  Q
    ||||||||||||| |||||    
T  3942 gttaaagtttgtaatggaa 3960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 69781 - 69899
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||||||||||||||| ||| ||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| || || |    
T  69781 tatttgtaaaaaatatttgtcccacaatacttgaccttctcaaatttctaagcaaaatttgacagatttaccgcttataaatactttttgtgatccccgt 69880  T
Q  243 gttaaagtttgtagtggaa 261  Q
     ||||||||||||||||||    
T  69881 attaaagtttgtagtggaa 69899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1194 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: scaffold1194
Description:

Target: scaffold1194; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 1007 - 1125
Alignment:
Q  143 tatttgtaaaaaatatttatcctacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcaccat 242  Q
    |||||| ||||||||||| ||| ||||||||||| |||||||||||| ||||||  |||||||| |||||||||||||||||||||||||||||| ||||    
T  1007 tatttggaaaaaatatttgtcccacaatacttgagcttctcagatttttaagcaggatttgacaaatttaccccttataaatactttttgtggtctccat 1106  T
Q  243 gttaaagtttgtagtggaa 261  Q
    || ||||||||||||||||    
T  1107 gtaaaagtttgtagtggaa 1125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University