View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12680_low_14 (Length: 324)
Name: NF12680_low_14
Description: NF12680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12680_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 23 - 314
Target Start/End: Original strand, 24203221 - 24203512
Alignment:
| Q |
23 |
gggcctcattttctccatcctgtaagatctcatgagatccatgtgagggatattatcaactcgaagaagttatttgagtacgcagccatcaccttgcaag |
122 |
Q |
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| T |
24203221 |
gggcctcattttctccatcctgtaagatctcatgagatccatgtgagggatattatcaactcgaagaagttatttgagtacgcagtcatcaccttgcaag |
24203320 |
T |
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| Q |
123 |
ccagtttgtaagggctgagttagatccaacctaaattctaagtattccactggaatatcttttgttgacttaaaccagtttgaatttaatgacttgtcct |
222 |
Q |
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| T |
24203321 |
ccagtttgtaagggctgagttagacccaacctaaattctaagtattccactggaatatcttttgttgacttaaaccagtttgaatttaatgacttgtcct |
24203420 |
T |
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| Q |
223 |
tgaagtattctgcaagagtttataggttggttcttgtccttgaatttataccataaatactttttaagcattaaggtttattggttcctttg |
314 |
Q |
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| T |
24203421 |
tgaagtattctgcaagagtttataggttggttcttgtccttgaatttataccatacatactttttaagcattaaggtttattggttcctttg |
24203512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 257 - 314
Target Start/End: Complemental strand, 27560418 - 27560361
Alignment:
| Q |
257 |
tgtccttgaatttataccataaatactttttaagcattaaggtttattggttcctttg |
314 |
Q |
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| T |
27560418 |
tgtccttgaattaataccatacatactttttaagcattaaggtttattgattcctttg |
27560361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 36667889 - 36667853
Alignment:
| Q |
278 |
aatactttttaagcattaaggtttattggttcctttg |
314 |
Q |
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| T |
36667889 |
aatactatttaagcattaaggtttattgattcctttg |
36667853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 29409864 - 29409796
Alignment:
| Q |
232 |
ctgcaagagtttataggttggttcttgtccttgaatttataccataaatactttttaagcattaaggtt |
300 |
Q |
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||||||||||||||||| |||||||||||||||| | ||||||| |||||||||||||||||||||| |
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| T |
29409864 |
ctgcaagagtttataggcgggttcttgtccttgaactagtaccatacatactttttaagcattaaggtt |
29409796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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