View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12680_low_16 (Length: 306)

Name: NF12680_low_16
Description: NF12680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12680_low_16
NF12680_low_16
[»] chr3 (2 HSPs)
chr3 (67-295)||(1138366-1138594)
chr3 (134-175)||(28802764-28802805)
[»] chr2 (2 HSPs)
chr2 (134-171)||(3110531-3110568)
chr2 (138-175)||(28044709-28044746)
[»] chr1 (3 HSPs)
chr1 (134-175)||(6025961-6026002)
chr1 (136-171)||(1118941-1118976)
chr1 (134-179)||(26161596-26161641)
[»] chr5 (1 HSPs)
chr5 (140-172)||(28734169-28734201)
[»] chr7 (2 HSPs)
chr7 (137-180)||(32888960-32889003)
chr7 (136-172)||(7245942-7245978)
[»] chr6 (2 HSPs)
chr6 (136-170)||(2730831-2730865)
chr6 (135-172)||(26373115-26373152)
[»] chr4 (2 HSPs)
chr4 (137-175)||(207500-207538)
chr4 (134-171)||(47789196-47789233)


Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 67 - 295
Target Start/End: Original strand, 1138366 - 1138594
Alignment:
Q  67 tatcttgtgtgggtttttaatcccaaaatagaggtttgattaaattatactatgttacaatgctttagctatagccactatttgacaactctttgtacta 166  Q
    |||||| ||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1138366 tatcttttgtcggtttttaattccaaaatagaggtttgcttaaattatactatgttacaatgctttagctatagccactatttgacaactctttgtacta 1138465  T
Q  167 aatagcataccactcttgcagtggattatttaccttcatacagctacgacagagtggtcgatattgaaccaccgtcgtgatgtccccatctttcgttcac 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  1138466 aatagcataccactcttgcagtggattatttaccttcatacagctacgacagagtggtcgatattgaaccaccgtcatgatgtccccatctttcattcac 1138565  T
Q  267 acattagcttcaaaaaatgccattttcat 295  Q
    | |||||||||||||||||||||||||||    
T  1138566 agattagcttcaaaaaatgccattttcat 1138594  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 28802764 - 28802805
Alignment:
Q  134 gctatagccactatttgacaactctttgtactaaatagcata 175  Q
    |||||||||||||||||||||| |||| || |||||||||||    
T  28802764 gctatagccactatttgacaacactttatattaaatagcata 28802805  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 3110531 - 3110568
Alignment:
Q  134 gctatagccactatttgacaactctttgtactaaatag 171  Q
    |||||||||||||||||||||| |||||||||||||||    
T  3110531 gctatagccactatttgacaacgctttgtactaaatag 3110568  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 175
Target Start/End: Original strand, 28044709 - 28044746
Alignment:
Q  138 tagccactatttgacaactctttgtactaaatagcata 175  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  28044709 tagccactatttgacaacactttgtactaaatcgcata 28044746  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 6025961 - 6026002
Alignment:
Q  134 gctatagccactatttgacaactctttgtactaaatagcata 175  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  6025961 gctatagccactatttgacaacattttgtactaaatagcata 6026002  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 171
Target Start/End: Complemental strand, 1118976 - 1118941
Alignment:
Q  136 tatagccactatttgacaactctttgtactaaatag 171  Q
    |||||||||||||||||||| |||||||||||||||    
T  1118976 tatagccactatttgacaacactttgtactaaatag 1118941  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 26161596 - 26161641
Alignment:
Q  134 gctatagccactatttgacaactctttgtactaaatagcataccac 179  Q
    ||||||||  |||||||||||  |||||||||||||||||||||||    
T  26161596 gctatagctgctatttgacaatactttgtactaaatagcataccac 26161641  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 172
Target Start/End: Original strand, 28734169 - 28734201
Alignment:
Q  140 gccactatttgacaactctttgtactaaatagc 172  Q
    |||||||||||||||||||||||||||||||||    
T  28734169 gccactatttgacaactctttgtactaaatagc 28734201  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 180
Target Start/End: Complemental strand, 32889003 - 32888960
Alignment:
Q  137 atagccactatttgacaactctttgtactaaatagcataccact 180  Q
    ||||||||||||||||||  ||||||||||||||||||| ||||    
T  32889003 atagccactatttgacaatactttgtactaaatagcatatcact 32888960  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 7245942 - 7245978
Alignment:
Q  136 tatagccactatttgacaactctttgtactaaatagc 172  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  7245942 tatagccgctatttgacaacactttgtactaaatagc 7245978  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 170
Target Start/End: Original strand, 2730831 - 2730865
Alignment:
Q  136 tatagccactatttgacaactctttgtactaaata 170  Q
    |||||||||||||||||||| ||||||||||||||    
T  2730831 tatagccactatttgacaacactttgtactaaata 2730865  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 26373152 - 26373115
Alignment:
Q  135 ctatagccactatttgacaactctttgtactaaatagc 172  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  26373152 ctataaccactatttgacaacactttgtactaaatagc 26373115  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 175
Target Start/End: Complemental strand, 207538 - 207500
Alignment:
Q  137 atagccactatttgacaactctttgtactaaatagcata 175  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  207538 atagccactatttgacaatactttgtactaaatagcata 207500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 47789233 - 47789196
Alignment:
Q  134 gctatagccactatttgacaactctttgtactaaatag 171  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  47789233 gctatagccactatttgacaacagtttgtactaaatag 47789196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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