View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12680_low_18 (Length: 298)
Name: NF12680_low_18
Description: NF12680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12680_low_18 |
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| [»] scaffold0417 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 17 - 287
Target Start/End: Complemental strand, 27254576 - 27254306
Alignment:
| Q |
17 |
actctatttattcattgtgtagtttagaaattttattatttatattctaatgtgctgaggttatgtcaaattctgtaatatttcaggctattcctagaaa |
116 |
Q |
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| T |
27254576 |
actctatttattcattgtgtagtttagaaattttattatttatattctaatgtgctgaggttatgtcaaattctgtaatatttcaggctattcctagaaa |
27254477 |
T |
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| Q |
117 |
gcgtttctatgatgttgttacgaagaatggggttgctttaccatttgggactatggtattgacttctattttggataaagttgcacctgattctggttta |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
27254476 |
gcgtttctatgatgttgttacgaagaatggggttgctttaccatttgggactatggtattgacttctattttggataaacttgcacctgattctggttta |
27254377 |
T |
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| Q |
217 |
ggttatgttggtgaagcaagattaacacctgatttatctactaaaaggaaaattccttggtacacaggttc |
287 |
Q |
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| T |
27254376 |
ggttatgttggtgaagcaagattaacacctgatttatctactaaaaggaaaattccttggtacacatgttc |
27254306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 66 - 287
Target Start/End: Complemental strand, 27294647 - 27294429
Alignment:
| Q |
66 |
atgtgctgaggttatgtcaaattctgtaatatttcaggctattcctagaaagcgtttctatgatgttgttacgaagaatggggttgctttaccatttggg |
165 |
Q |
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|||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27294647 |
atgttctgaggttatgtcaatttctgtaat---tcaggctattcctagaaagcgtttctatgatgttgttacgaagaatggggttgctgtaccatttggg |
27294551 |
T |
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| Q |
166 |
actatggtattgacttctattttggataaagttgcacctgattctggtttaggttatgttggtgaagcaagattaacacctgatttatctactaaaagga |
265 |
Q |
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| T |
27294550 |
agcatggcattgacttctattttgggtaaacttgcaccggattgtggtttaggttatgttggtgaagcaagattaacacctgatttatctactaaaagga |
27294451 |
T |
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| Q |
266 |
aaattccttggtacacaggttc |
287 |
Q |
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|||||||||||||||| |||| |
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| T |
27294450 |
caattccttggtacacatgttc |
27294429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 97 - 288
Target Start/End: Original strand, 27405008 - 27405199
Alignment:
| Q |
97 |
tttcaggctattcctagaaagcgtttctatgatgttgttacgaagaatggggttgctttaccatttgggactatggtattgacttctattttggataaag |
196 |
Q |
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||||||||| ||||||| ||||||||| ||||| ||||| |||||||||| |||| |||| | |||| |||||||| | |||| ||| |||| ||| | |
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| T |
27405008 |
tttcaggctgttcctaggaagcgtttcaatgattttgtttcgaagaatggcgttggtttagcttttgcgactatgggaatgacctcttttttagatggac |
27405107 |
T |
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| Q |
197 |
ttgcacctgattctggtttaggttatgttggtgaagcaagattaacacctgatttatctactaaaaggaaaattccttggtacacaggttct |
288 |
Q |
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| T |
27405108 |
ctgcagctgggtcagggttaggtgcagttggagaaacaagattaacacctgatttgtctactaaaaggaggattccttggtacacaagttct |
27405199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 97 - 288
Target Start/End: Original strand, 27425868 - 27426059
Alignment:
| Q |
97 |
tttcaggctattcctagaaagcgtttctatgatgttgttacgaagaatggggttgctttaccatttgggactatggtattgacttctattttggataaag |
196 |
Q |
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||||||||| ||||||||||||||||| ||||||||||| ||||||| ||||||| |||| |||||| |||||| | ||| |||| | | ||| |
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| T |
27425868 |
tttcaggctgttcctagaaagcgtttcaatgatgttgtttcgaagaacggggttggtttagcatttgcacctatgggaatgagttctttaatagatgggc |
27425967 |
T |
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| Q |
197 |
ttgcacctgattctggtttaggttatgttggtgaagcaagattaacacctgatttatctactaaaaggaaaattccttggtacacaggttct |
288 |
Q |
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| T |
27425968 |
ctgcagccgggtctggtttaggtgcagttggtgaaacaagattaacgcctgacttgtctactaaaaggaggattccttggtacacaagttct |
27426059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0417 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0417
Description:
Target: scaffold0417; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 97 - 278
Target Start/End: Complemental strand, 12901 - 12720
Alignment:
| Q |
97 |
tttcaggctattcctagaaagcgtttctatgatgttgttacgaagaatggggttgctttaccatttgggactatggtattgacttctattttggataaag |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||| |||||| || ||||||| |||||||| |||||||| | |
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| T |
12901 |
tttcaggctattcctagaaagcgtttctatgatgttgttactaagaatggtgttggtttagcatttgtgagtatggtaatgacttcttttttggatggat |
12802 |
T |
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| Q |
197 |
ttgcacctgattctggtttaggttatgttggtgaagcaagattaacacctgatttatctactaaaaggaaaattccttggta |
278 |
Q |
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| T |
12801 |
ctccagctggttctggtttaggttcagttggtgaagcaagattaacacctgatttatctactaaaaggacaattccttggta |
12720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 97 - 283
Target Start/End: Original strand, 13354343 - 13354529
Alignment:
| Q |
97 |
tttcaggctattcctagaaagcgtttctatgatgttgttacgaagaatggggttgctttaccatttgggactatggtattgacttctattttggataaag |
196 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| |||||||||| ||| |||| |||||| | ||| ||| |||||||| |||| |||| | |
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| T |
13354343 |
tttcaggctattcctagaaagcatttctatgatgttgttaagaagaatgggattggtttagcatttgtaagtatcgtaatgacttctgttttagatagac |
13354442 |
T |
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| Q |
197 |
ttgcacctgattctggtttaggttatgttggtgaagcaagattaacacctgatttatctactaaaaggaaaattccttggtacacag |
283 |
Q |
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|||||||| |||||| |||| | || ||||| |||||| || |||| ||||| ||||||| ||||| ||||||||||||||||| |
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| T |
13354443 |
ctgcacctggctctggtctagggttagtcggtgatgcaagagtagcaccagatttgtctactataaggacaattccttggtacacag |
13354529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 275
Target Start/End: Original strand, 6792298 - 6792460
Alignment:
| Q |
113 |
gaaagcgtttctatgatgttgttacgaagaatggggttgctttaccatttgggactatggtattgacttctattttggataaagttgcacctgattctgg |
212 |
Q |
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|||||| ||| ||||||| |||||| |||||||||||||||||| || || || ||||||| |||||||| ||||||||| | ||||| || || ||| |
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| T |
6792298 |
gaaagcatttttatgatgatgttacaaagaatggggttgctttagcagatgagaatatggtaatgacttctgttttggatagacctgcacgtgcttatgg |
6792397 |
T |
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| Q |
213 |
tttaggttatgttggtgaagcaagattaacacctgatttatctactaaaaggaaaattccttg |
275 |
Q |
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|||||||| | |||||||||||||||| | |||| |||| ||| ||| ||| | ||||||||| |
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| T |
6792398 |
tttaggttttattggtgaagcaagatttaaacctcatttgtcttctataagtacaattccttg |
6792460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 6799525 - 6799637
Alignment:
| Q |
132 |
tgttacgaagaatggggttgctttaccatttgggactatggtattga---cttctattttggataaagttgcacctgattctggtttaggttatgttggt |
228 |
Q |
| |
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|||||| ||||||||||||| |||| || ||||||||||||| ||| ||||| ||||||||| | ||||||| || ||||||||||| | ||||| |
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| T |
6799525 |
tgttacaaagaatggggttggtttagcagatgggactatggtaatgacttcttcttttttggatagacctgcaccttcttatggtttaggttttattggt |
6799624 |
T |
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| Q |
229 |
gaagcaagattaa |
241 |
Q |
| |
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||||||||||||| |
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| T |
6799625 |
gaagcaagattaa |
6799637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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