View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12680_low_2 (Length: 795)
Name: NF12680_low_2
Description: NF12680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12680_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 336 - 779
Target Start/End: Complemental strand, 26672219 - 26671801
Alignment:
| Q |
336 |
ggtagtgatgaaaaaagaaccgaaagaaaatctgattttaagatttctggtagttctagtaatggtggtggtggttctcttaagaagaaagtttcttcca |
435 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26672219 |
ggtagtgatgaaaaaagaaccgaaagaaaatctgattttaagatttctggtagttctagtaatggtggtggt---tctcttaagaagaaagtttcttcca |
26672123 |
T |
|
| Q |
436 |
agattaagcattctctcaagaaaaagagtggtagaagaaagagtgatggacgtgttagttctgtttccattgaggatattcgtgatgttgaggagcttca |
535 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26672122 |
agattaagcattctctcaagaaaaagagtggtagaagaaagagtgatggacgtgttagttctgtttccattgaggatattcgtgatgttgaggagcttca |
26672023 |
T |
|
| Q |
536 |
agctgttgatgcctttcgacaatcattgatcgccgaggaattgcttccgaaaaagcatgatgattatcatttgatgctaaggtgccctgccctgccctcc |
635 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
26672022 |
agctgttgatgcctttcgacaatcattgatcgccgaggaattgcttccgaaaaagcatgatgattatcatttgatgctaaggtgccctgcctt-----cc |
26671928 |
T |
|
| Q |
636 |
ctacattgcttgtcttaatgtgttattaagttgtttttataagctatattggttaacttgggaaaataagttgnnnnnnnncttacaaaaactctcataa |
735 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
26671927 |
ctacattgcttgtgttaatgtgttattaagttgtttttataa-----------------aggaaaataagttgaaaaaaaacttacaaaaactctcataa |
26671845 |
T |
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| Q |
736 |
gttgttttcataaattcttaacaaaacttatgccagtagataag |
779 |
Q |
| |
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| T |
26671844 |
gttgttttcataaattcttaacaaaacttatgccagtagataag |
26671801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 11 - 273
Target Start/End: Complemental strand, 26672540 - 26672282
Alignment:
| Q |
11 |
cagagacagagctgaacaaaacacagtgtcggaaggaagaaggaatctaaacatccatcattttctcgtgattccctaacccatctacattctcttctct |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26672540 |
cagagacagagctgaacaaaacacagtgtcggaaggaagaaggaatctaaacatccatcattttctcgtgattccctaacccatctacattctcttctct |
26672441 |
T |
|
| Q |
111 |
tctttttattatccttcctcatacacacgcgccattctcattccacgcgccttctcttctttctttcctagctagggtttccttctctcatcatcgcaat |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26672440 |
tctttttattatccttcctcatacacacgcgccattctcattccacgcgccttctcttctttctttc----ctagggtttccttctctcatcatcgcaat |
26672345 |
T |
|
| Q |
211 |
gtccagccccatcgatcgtttcgctcttccatgtcagttcccctctctcattcatacattcaa |
273 |
Q |
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| T |
26672344 |
gtccagccccatcgatcgtttcgctcttccatgtcagttcccctctctcattcatacattcaa |
26672282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 4e-31; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 433 - 566
Target Start/End: Complemental strand, 54781807 - 54781674
Alignment:
| Q |
433 |
ccaagattaagcattctctcaagaaaaagagtggtagaagaaagagtgatggacgtgttagttctgtttccattgaggatattcgtgatgttgaggagct |
532 |
Q |
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||||| ||||||||||||| | || |||||| |||| ||||||||||||||||||||||| |||||||| ||||||||| || | |||||||||||||| |
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| T |
54781807 |
ccaagtttaagcattctcttagaaagaagagtagtaggagaaagagtgatggacgtgttagctctgtttcaattgaggatgttagagatgttgaggagct |
54781708 |
T |
|
| Q |
533 |
tcaagctgttgatgcctttcgacaatcattgatc |
566 |
Q |
| |
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||||||||||||||| ||||| || || |||||| |
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| T |
54781707 |
tcaagctgttgatgcttttcgtcagtctttgatc |
54781674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 660 - 708
Target Start/End: Original strand, 35696238 - 35696286
Alignment:
| Q |
660 |
attaagttgtttttataagctatattggttaacttgggaaaataagttg |
708 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||| |||||||||||| |
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| T |
35696238 |
attaaattgtttttataagctatattggagaacttgtgaaaataagttg |
35696286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 662 - 708
Target Start/End: Original strand, 39980731 - 39980777
Alignment:
| Q |
662 |
taagttgtttttataagctatattggttaacttgggaaaataagttg |
708 |
Q |
| |
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|||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
39980731 |
taagttgtttttataagctatattggagaacttatgaaaataagttg |
39980777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 662 - 708
Target Start/End: Complemental strand, 43279597 - 43279551
Alignment:
| Q |
662 |
taagttgtttttataagctatattggttaacttgggaaaataagttg |
708 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
43279597 |
taagttgtttttataagctatattggagaacttgtgaaaataagttg |
43279551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 662 - 708
Target Start/End: Complemental strand, 19022653 - 19022607
Alignment:
| Q |
662 |
taagttgtttttataagctatattggttaacttgggaaaataagttg |
708 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
19022653 |
taagttgtttttataagctatattggagaacttatgaaaataagttg |
19022607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 662 - 708
Target Start/End: Complemental strand, 17603452 - 17603406
Alignment:
| Q |
662 |
taagttgtttttataagctatattggttaacttgggaaaataagttg |
708 |
Q |
| |
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|||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
17603452 |
taagttgtttttataagctatattggagaacttctgaaaataagttg |
17603406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 730 - 779
Target Start/End: Original strand, 7853709 - 7853758
Alignment:
| Q |
730 |
tcataagttgttttcataaattcttaacaaaacttatgccagtagataag |
779 |
Q |
| |
|
||||||||||||| ||||| |||| |||||||||||| ||||||||||| |
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|
| T |
7853709 |
tcataagttgtttccataagttctccacaaaacttatgtcagtagataag |
7853758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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