View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12680_low_29 (Length: 255)
Name: NF12680_low_29
Description: NF12680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12680_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 39084391 - 39084163
Alignment:
| Q |
17 |
actactaaccaaaactaaaataactataccactaaaaactcttgaggaacaaccaatgagtatgttttttctcaatattcttctccttaatagtatccaa |
116 |
Q |
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| T |
39084391 |
actactaaccaaaactaaaataactataccactaaaaactcttgaggaacaaccaatgagtatgttttttctcaatattcttctccttaatagtatccaa |
39084292 |
T |
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| Q |
117 |
gctaggcttccaccctttccctgaaatctgcctattcaaataatctggtctcccttccattatttccggcaaattctccgaaaaatcatgtctctctccc |
216 |
Q |
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| T |
39084291 |
gctaggcttccaccctttccctgaaatctgcctattcaaataatctggtctcccttccattatttccggcaaattctccgaaaaatcatgtctctctccc |
39084192 |
T |
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| Q |
217 |
ttctcctccatcacctcttcctttctctg |
245 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
39084191 |
ttctcctccatcacctcttcctttctctg |
39084163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 94 - 157
Target Start/End: Original strand, 44729752 - 44729815
Alignment:
| Q |
94 |
ttcttctccttaatagtatccaagctaggcttccaccctttccctgaaatctgcctattcaaat |
157 |
Q |
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| T |
44729752 |
ttcttttccttaattgtatccaagctaggcttccaccctttccctgataattgcctactcaaat |
44729815 |
T |
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