View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12680_low_31 (Length: 250)
Name: NF12680_low_31
Description: NF12680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12680_low_31 |
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| [»] scaffold1235 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 65 - 240
Target Start/End: Original strand, 29218373 - 29218548
Alignment:
| Q |
65 |
ataggattcattctctaactccccctctcaaactgatgggtgaaggagtcaacccaagtttgtctctaagttggttgaaacgagtatgagtcaaggcctt |
164 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29218373 |
ataggattcattctctaactccccctctcaaactgatgggtgaaggagtcaacccaagtttgtctctaagttggttgaaacgagtatgagtcaaggcctt |
29218472 |
T |
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| Q |
165 |
ggtgagacagtcagcaatttgatcagctgatggaacatatgctacaatgatcttatcttgtagtacttgatctctg |
240 |
Q |
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|||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
29218473 |
agtgagacagttagtaatttgatcagctgatgggacatatgctacaatgatcttatcttgtagtacttgatctctg |
29218548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 65 - 240
Target Start/End: Original strand, 29331672 - 29331847
Alignment:
| Q |
65 |
ataggattcattctctaactccccctctcaaactgatgggtgaaggagtcaacccaagtttgtctctaagttggttgaaacgagtatgagtcaaggcctt |
164 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29331672 |
ataggattcattctctaactccccctctcaaactgatgggtgaaggagtcaacccaagtttgtctctaagttggttgaaacgagtatgagtcaaggcctt |
29331771 |
T |
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| Q |
165 |
ggtgagacagtcagcaatttgatcagctgatggaacatatgctacaatgatcttatcttgtagtacttgatctctg |
240 |
Q |
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| T |
29331772 |
agtgagacagttagtaatttgatcagctgatgggacatatgctacaatgatcttatcttgtagtacttgatctctg |
29331847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 29227171 - 29227237
Alignment:
| Q |
18 |
ataattacagttgactagtgctattgattacaatgattcagtcaatcataggattcattctctaact |
84 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29227171 |
ataattacaattgactagtgctattgattacaatgattcagtcaatcataggattcattctctaact |
29227237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 29340470 - 29340536
Alignment:
| Q |
18 |
ataattacagttgactagtgctattgattacaatgattcagtcaatcataggattcattctctaact |
84 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29340470 |
ataattacaattgactagtgctattgattacaatgattcagtcaatcataggattcattctctaact |
29340536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 240
Target Start/End: Complemental strand, 22994857 - 22994735
Alignment:
| Q |
118 |
ccaagtttgtctctaagttggttgaaacgagtatgagtcaaggccttggtgagacagtcagcaatttgatcagctgatggaacatatgctacaatgatct |
217 |
Q |
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|||||||||||||| ||||| ||||||| || ||| | || | |||||||||||| || ||||||||||| | || |||||||| || |||| | || |
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| T |
22994857 |
ccaagtttgtctcttagttgactgaaacgtgtgtgacttaatggcttggtgagacaatctgcaatttgatccgttgtaggaacataagccacaacaacct |
22994758 |
T |
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| Q |
218 |
tatcttgtagtacttgatctctg |
240 |
Q |
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|| |||||||||||| |||||| |
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| T |
22994757 |
cattttgtagtacttggtctctg |
22994735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 29227129 - 29227161
Alignment:
| Q |
1 |
atgacaatgattctataataattacagttgact |
33 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
29227129 |
atgacaatgattctataataattacatttgact |
29227161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 29340428 - 29340460
Alignment:
| Q |
1 |
atgacaatgattctataataattacagttgact |
33 |
Q |
| |
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|||||||||||||||||||||||||| |||||| |
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| T |
29340428 |
atgacaatgattctataataattacatttgact |
29340460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1235 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1235
Description:
Target: scaffold1235; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 240
Target Start/End: Complemental strand, 2281 - 2159
Alignment:
| Q |
118 |
ccaagtttgtctctaagttggttgaaacgagtatgagtcaaggccttggtgagacagtcagcaatttgatcagctgatggaacatatgctacaatgatct |
217 |
Q |
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|
|||||||||||||| ||||| ||||||| || ||| | || | |||||||||||| || ||||||||||| | || |||||||| || |||| | || |
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| T |
2281 |
ccaagtttgtctcttagttgactgaaacgtgtgtgacttaatggcttggtgagacaatctgcaatttgatccgttgtaggaacataagccacaacaacct |
2182 |
T |
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| Q |
218 |
tatcttgtagtacttgatctctg |
240 |
Q |
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||| |||||||||||| |||||| |
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| T |
2181 |
tattttgtagtacttggtctctg |
2159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 240
Target Start/End: Original strand, 29736469 - 29736591
Alignment:
| Q |
118 |
ccaagtttgtctctaagttggttgaaacgagtatgagtcaaggccttggtgagacagtcagcaatttgatcagctgatggaacatatgctacaatgatct |
217 |
Q |
| |
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|||||||||||||| ||||| ||||||| || ||| | || | |||||||||||| || ||||||||||| | || |||||||| || |||| | || |
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| T |
29736469 |
ccaagtttgtctcttagttgactgaaacgtgtgtgacttaatggcttggtgagacaatctgcaatttgatccgttgtaggaacataagccacaacaacct |
29736568 |
T |
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| Q |
218 |
tatcttgtagtacttgatctctg |
240 |
Q |
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||| |||||||||||| |||||| |
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| T |
29736569 |
tattttgtagtacttggtctctg |
29736591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 240
Target Start/End: Complemental strand, 28402792 - 28402670
Alignment:
| Q |
118 |
ccaagtttgtctctaagttggttgaaacgagtatgagtcaaggccttggtgagacagtcagcaatttgatcagctgatggaacatatgctacaatgatct |
217 |
Q |
| |
|
|||||||||||||| ||||| ||||||| || ||| | || | |||||||||||| || ||||||||||| | || |||||||| || |||| | || |
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| T |
28402792 |
ccaagtttgtctcttagttgactgaaacgtgtgtgacttaatggcttggtgagacaatctgcaatttgatccgttgtaggaacataagccacaacaacct |
28402693 |
T |
|
| Q |
218 |
tatcttgtagtacttgatctctg |
240 |
Q |
| |
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||| |||||||||||| |||||| |
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|
| T |
28402692 |
tattttgtagtacttggtctctg |
28402670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 240
Target Start/End: Original strand, 8320109 - 8320231
Alignment:
| Q |
118 |
ccaagtttgtctctaagttggttgaaacgagtatgagtcaaggccttggtgagacagtcagcaatttgatcagctgatggaacatatgctacaatgatct |
217 |
Q |
| |
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|||||||||||||| ||||| ||||||| || ||| | || | |||||||||||| || ||||||||||| | || |||||||| || |||| | || |
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| T |
8320109 |
ccaagtttgtctcttagttgactgaaacgtgtgtgacttaatggcttggtgagacaatctgcaatttgatccgttgtaggaacataagccacaacaacct |
8320208 |
T |
|
| Q |
218 |
tatcttgtagtacttgatctctg |
240 |
Q |
| |
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||| |||||||||||| |||||| |
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| T |
8320209 |
tattttgtagtacttggtctctg |
8320231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 240
Target Start/End: Complemental strand, 493799 - 493677
Alignment:
| Q |
118 |
ccaagtttgtctctaagttggttgaaacgagtatgagtcaaggccttggtgagacagtcagcaatttgatcagctgatggaacatatgctacaatgatct |
217 |
Q |
| |
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|||||||||| ||| ||||| ||||||| || ||| | || | |||||||||||| || ||||||||||| | || |||||||| || |||| | || |
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| T |
493799 |
ccaagtttgtgtcttagttgactgaaacgtgtgtgacttaatggcttggtgagacaatctgcaatttgatccgttgtaggaacataagccacaacaacct |
493700 |
T |
|
| Q |
218 |
tatcttgtagtacttgatctctg |
240 |
Q |
| |
|
||| |||||||||||| |||||| |
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|
| T |
493699 |
tattttgtagtacttggtctctg |
493677 |
T |
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