View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12680_low_33 (Length: 242)
Name: NF12680_low_33
Description: NF12680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12680_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 2 - 227
Target Start/End: Complemental strand, 646120 - 645895
Alignment:
| Q |
2 |
ccactttggaaccaaacatacaccaaatgagaatgagtatttgatactgacattaactttaaggcgtaaaatatggcacttcttaggaacgaagtttccg |
101 |
Q |
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| T |
646120 |
ccactttggaaccaaacatacactaaacgagaatgagtatttgatactaacattaactttaaggcgtaaaatatggcacttcttaggaacgaagtttccg |
646021 |
T |
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| Q |
102 |
aagtcaacaacatccttgatcttattatcattggcatcttcaagatacaaatcatcacagttccaattgatttcacttttcttcttcatggattcggagt |
201 |
Q |
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| T |
646020 |
aaatcaacaacatccttgatcttattatcattggcatcttcaagatacaaatcatcacagttccaattgatttcacttttcttcttcatggattcggagt |
645921 |
T |
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| Q |
202 |
tttgccgaattttcaaatacctaatt |
227 |
Q |
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||| |||||||||||||||||||||| |
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| T |
645920 |
ttttccgaattttcaaatacctaatt |
645895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 55 - 196
Target Start/End: Complemental strand, 683815 - 683674
Alignment:
| Q |
55 |
taactttaaggcgtaaaatatggcacttcttaggaacgaagtttccgaagtcaacaacatccttgatcttattatcattggcatcttcaagatacaaatc |
154 |
Q |
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|||| |||||||||||||| |||||||| ||||||| ||| ||| ||| |||||||| | |||||||||||||||| | ||||||||||| ||||| | |
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| T |
683815 |
taacattaaggcgtaaaatgtggcacttgttaggaatgaaatttttgaaatcaacaacgttcttgatcttattatcactaacatcttcaagaaacaaacc |
683716 |
T |
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| Q |
155 |
atcacagttccaattgatttcacttttcttcttcatggattc |
196 |
Q |
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| T |
683715 |
accactattccaattgatttcccttttcttcctcatggattc |
683674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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