View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12680_low_35 (Length: 229)
Name: NF12680_low_35
Description: NF12680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12680_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 41037734 - 41037944
Alignment:
| Q |
1 |
acatcaactaactgatggattgatcttctttattgcaccacaagacagtgtgattccacccaactcagaaaatcaatattttggattagttgattcaaag |
100 |
Q |
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| T |
41037734 |
acatcaactaactgatggattgatcttctttattgcaccacaagacactgtgattccacccaattcagaaagtcaatattttggagtagttgattcaaag |
41037833 |
T |
|
| Q |
101 |
aatgcttacaatcaatttgttggtgtagagtttgacctttatcccaatagttttgatccctatatttaccatattggaatcgatgtcaactctataattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41037834 |
aatgcttacaatcaatttgttggtgtagagtttgacctttatcccaatagttttgatccctatatttaccatattggaatcgatgtcaactctataattt |
41037933 |
T |
|
| Q |
201 |
cgaccaagatc |
211 |
Q |
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||||||||||| |
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| T |
41037934 |
cgaccaagatc |
41037944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 41065933 - 41066124
Alignment:
| Q |
10 |
aactgatggattgatcttctttattgcaccacaagacagtgtgattccacccaactcagaaaatcaatattttggattagttgattcaaagaatgcttac |
109 |
Q |
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||||||||| ||| |||||||||||||||||||||||| | |||||||||||||||||||| ||||||| ||||| ||||||||||||| ||| ||||| |
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| T |
41065933 |
aactgatggtttggtcttctttattgcaccacaagacactaagattccacccaactcagaaagtcaatatcttggagtagttgattcaaaaaatacttac |
41066032 |
T |
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| Q |
110 |
aatcaatttgttggtgtagagtttgacctttatcccaatagttttgatccctatatttaccatattggaatcgatgtcaactctataatttc |
201 |
Q |
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| T |
41066033 |
aatcaatttgttggtgtagagtttgacctttatcccaatagttttgatcccaatacgaaacatattggaatcgatgtcaactctttaatttc |
41066124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 10 - 211
Target Start/End: Original strand, 41043785 - 41043986
Alignment:
| Q |
10 |
aactgatggattgatcttctttattgcaccacaagacagtgtgattccacccaactcagaaaatcaatattttggattagttgattcaaagaatgcttac |
109 |
Q |
| |
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|||||||||| ||||||| ||||||||||||||||||| ||||||||||||| ||||| || | | ||||||| |||||||| | | ||||||||| |
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| T |
41043785 |
aactgatggagtgatcttttttattgcaccacaagacactgtgattccaccccactcaacaagtgcacgttttggagtagttgatatagaaaatgcttac |
41043884 |
T |
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| Q |
110 |
aatcaatttgttggtgtagagtttgacctttatcccaatagttttgatccctatatttaccatattggaatcgatgtcaactctataatttcgaccaaga |
209 |
Q |
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||||||||||||||||||||||||||||||||| |||||| | |||||||| |||| | ||||||||||||||| |||||||| ||||||||| ||||| |
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| T |
41043885 |
aatcaatttgttggtgtagagtttgacctttataccaatattcttgatcccaatatgaaacatattggaatcgatatcaactctttaatttcgagcaaga |
41043984 |
T |
|
| Q |
210 |
tc |
211 |
Q |
| |
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|| |
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| T |
41043985 |
tc |
41043986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 135
Target Start/End: Original strand, 41074111 - 41074145
Alignment:
| Q |
101 |
aatgcttacaatcaatttgttggtgtagagtttga |
135 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
41074111 |
aatgcttacaatcaatttgttggtgtagagtttga |
41074145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 41047360 - 41047304
Alignment:
| Q |
93 |
attcaaagaatgcttacaatcaatttgttggtgtagagtttgacctttatcccaata |
149 |
Q |
| |
|
||||||| ||||||| ||| ||||||||||||||||||||||| |||| |||||| |
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| T |
41047360 |
attcaaataatgcttttaataaatttgttggtgtagagtttgacacttatgccaata |
41047304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 14 - 201
Target Start/End: Complemental strand, 8496198 - 8496011
Alignment:
| Q |
14 |
gatggattgatcttctttattgcaccacaagacagtgtgattccacccaactcagaaaatcaatattttggattagttgattcaaagaatgcttacaatc |
113 |
Q |
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||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| || | || ||||| ||||||||||||| | | ||||||||| |
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| T |
8496198 |
gatggattggtcttctttattgcaccacaagacactgtgattccacccaactcagaaagtctacatcttggagtagttgattcaaaaagttcttacaatc |
8496099 |
T |
|
| Q |
114 |
aatttgttggtgtagagtttgacctttatcccaatagttttgatccctatatttaccatattggaatcgatgtcaactctataatttc |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||| |
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| T |
8496098 |
aatttgttggtgtagagtttgacctttatcccaatagttttgatcccaatacgagacatattggaatcgatgtcaactctttaatttc |
8496011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 136
Target Start/End: Original strand, 21482869 - 21482904
Alignment:
| Q |
101 |
aatgcttacaatcaatttgttggtgtagagtttgac |
136 |
Q |
| |
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||||||| |||||||||||||||||||||||||||| |
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| T |
21482869 |
aatgctttcaatcaatttgttggtgtagagtttgac |
21482904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 136
Target Start/End: Original strand, 21493021 - 21493056
Alignment:
| Q |
101 |
aatgcttacaatcaatttgttggtgtagagtttgac |
136 |
Q |
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||||||| |||||||||||||||||||||||||||| |
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| T |
21493021 |
aatgctttcaatcaatttgttggtgtagagtttgac |
21493056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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