View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12680_low_36 (Length: 223)
Name: NF12680_low_36
Description: NF12680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12680_low_36 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 26558489 - 26558267
Alignment:
| Q |
1 |
tttgaatggtatatcttttttagatattgtagatgggatggagtacgcgaacaaattacttcggtagcagcttcaagatttttgtccacaattaaagact |
100 |
Q |
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| T |
26558489 |
tttgaatggtatatcttttttagatattgtagatgggatggagtacgcgaacaaattacttcggtagcagcttcaagatttttgtccacaattaaagact |
26558390 |
T |
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| Q |
101 |
tcctaatgatttctacgtcgcgtcctgcagggtcaggcatccaaagcaggactgcagtctgcaaaaccaaatcaagtctgcaacgtcgcataatttgaat |
200 |
Q |
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| T |
26558389 |
tcctaatgatttctacgtcgcgtcctgcagggtcaggcatccaaagcaggactgcagtctgcaaaaccaaataaagtctgcaacgtctcataatttgaat |
26558290 |
T |
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| Q |
201 |
aacatgatcattgagtgtatact |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
26558289 |
aacatgatcattgagtgtatact |
26558267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 26563977 - 26563810
Alignment:
| Q |
1 |
tttgaatggtatatcttttttagatattgtagatgggatggagtacgcgaacaaattacttcggtagcagcttcaagatttttgtccacaattaaagact |
100 |
Q |
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||||||||||||| || |||||||||||| || |||||||||| ||||||||| | ||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
26563977 |
tttgaatggtataactgttttagatattggagttgggatggagcacgcgaacataatacttcggtagcagcttcaaggtttttgtccacaattagagact |
26563878 |
T |
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| Q |
101 |
tcctaatgatttctacgtcgcgtcctgcagggtcaggcatccaaagcaggactgcagtctgcaaaacc |
168 |
Q |
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| T |
26563877 |
tcctaatgatttctgcgtcacgtcctgcagggtcaggcatccaaagcagaactgcagtctgaaaaacc |
26563810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 26551843 - 26551683
Alignment:
| Q |
1 |
tttgaatggtatatcttttttagatattgtagatgggatggagtacgcgaacaaattacttcggtagcagcttcaagatttttgtccacaattaaagact |
100 |
Q |
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| T |
26551843 |
tttgaatggtataactgttttagatattgaagttgggacggagtacgtgaacaaattacttcggtggcagcttcaaggtttctgtccacaactagcgact |
26551744 |
T |
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| Q |
101 |
tcctaatgatttctacgtcgcgtcctgcagggtcaggcatccaaagcaggactgcagtctg |
161 |
Q |
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| T |
26551743 |
tcctaatgatttctgcatcacgtgcggcagggtcaggcaaccaaagtagaactgcagtctg |
26551683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 50935839 - 50936005
Alignment:
| Q |
1 |
tttgaatggtatatcttttttagatattgtagatgggatggagtacgcgaacaaattacttcggtagcagcttcaagatttttgtccacaattaaagact |
100 |
Q |
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||||||||||||| || ||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||| | ||||||| || |||| |
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| T |
50935839 |
tttgaatggtataactgttttagatattgtagttgggatggagtgcgcgaacagattacttcggtagcagcttcaaggtttctatccacaactagtgact |
50935938 |
T |
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| Q |
101 |
tcctaatgatttctacgtcgcgtcctgcagggtcaggcatccaaagcaggactgcagtctgcaaaac |
167 |
Q |
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| T |
50935939 |
tcctgatgatttccacatcacgtcctgcatggtcaggcatccaaagtagaacagcagtctgaaaaac |
50936005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 50936309 - 50936341
Alignment:
| Q |
191 |
taatttgaataacatgatcattgagtgtatact |
223 |
Q |
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| T |
50936309 |
taatttgaataacatgatcattgagtgtatact |
50936341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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