View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12680_low_39 (Length: 206)
Name: NF12680_low_39
Description: NF12680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12680_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 31678913 - 31679087
Alignment:
| Q |
16 |
ttttagtgacctaaattaggtaagtcgtgtatggtgatttaaggaatacatgtcgattgttaagaaaatattcaatttattctctaaagttgtctttcaa |
115 |
Q |
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| T |
31678913 |
ttttagtgacctaaattaggtaagtcttgtatggtgatttaaggaat--atgtcagttgttaag-aaatatgcaatttattctctaaaattgtctttcaa |
31679009 |
T |
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| Q |
116 |
ttaca-------tttgaatttgattatgtaaaaagttaataatgccttgtaatttaaagataaattgttctgtttcat |
186 |
Q |
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| T |
31679010 |
ttgcatttgaattttgaatttgattatgtaaaaagttaataatgccttgtaatttaaagataaattgttatgtttcat |
31679087 |
T |
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Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 171
Target Start/End: Complemental strand, 31628464 - 31628310
Alignment:
| Q |
15 |
attttagtgacctaaattaggtaagtcgtgtatggtgatttaaggaatacatgtcgattgttaagaaaatattcaatttattctctaaagttgtctttca |
114 |
Q |
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|||||||| ||||||||||| ||||| |||||||||||| |||||||| ||| |||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
31628464 |
attttagtcacctaaattagataagttgtgtatggtgatataaggaatt--tgttaattgttaagaaaatatgcaatttattctctaaagttgtcttt-a |
31628368 |
T |
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| Q |
115 |
attacatttgaatttgattatgtaaaaagttaa-taatgccttgtaatttaaagataa |
171 |
Q |
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| T |
31628367 |
attacatttgaacttgattatgtaaaaagttaattaatgccttgtaatttaaagataa |
31628310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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