View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12680_low_40 (Length: 205)
Name: NF12680_low_40
Description: NF12680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12680_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 114; Significance: 5e-58; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 10 - 171
Target Start/End: Original strand, 8773463 - 8773624
Alignment:
| Q |
10 |
aagcagagagagtgattggtaaagaggaaagtgagcaattaacaatctttattttgtgcaagatttcaccaacnnnnnnnnccattaaatcatatattat |
109 |
Q |
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| T |
8773463 |
aagcagagagagtgattggtaaagaggaaaatgagcaattaacaatcttcattttgtgcaagatttcaccaacaagaaaaatcattaaatcgtatattat |
8773562 |
T |
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| Q |
110 |
ttagagttcgacacaaaactaaaccggcttaaactacacaaagttctttcggtttacccaac |
171 |
Q |
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| T |
8773563 |
ttagagttcgacacaaaactaaaccggcttaaactacgcaaagtactttcggtttacccaac |
8773624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 24 - 205
Target Start/End: Original strand, 8775822 - 8776000
Alignment:
| Q |
24 |
attggtaaagaggaaagtgagcaattaacaatctttattttgtgcaagatttcaccaacnnnnnnnnccattaaatcatatattatttagagttcgacac |
123 |
Q |
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| T |
8775822 |
attggtaaagagaaaagttagcaattaacaatctttattttgggcaagattgcaccaacaagaaaaaccataaa---atatattatttagagttcaactt |
8775918 |
T |
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| Q |
124 |
aaaactaaaccggcttaaactacacaaagttctttcggtt-tacccaaccaagggaatagagcaccaccattgaggcggttga |
205 |
Q |
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| T |
8775919 |
aaaactaaatcaactcaaacta-agcaagctctttgggttataccaaactaagggaatatagcaacaccattgaggcggttga |
8776000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 8787784 - 8787606
Alignment:
| Q |
24 |
attggtaaagaggaaagtgagcaattaacaatctttattttgtgcaagatttcaccaacnnnnnnnnccattaaatcatatattatttagagttcgacac |
123 |
Q |
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| T |
8787784 |
attggtaaagagaaaagttagcaattaacaatctttattttgggcaagattgcagcaacaagaaaaaccataaa---atatattatttagagttcaactc |
8787688 |
T |
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| Q |
124 |
aaaactaaaccggcttaaactacacaaagttctttcggtt-tacccaaccaagggaatagagcaccaccattgaggcggttga |
205 |
Q |
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| T |
8787687 |
aaaactaaatcaactcaaacta-agcaagctctttgggttataccaaactaagggaatatagcaacaccattgaggcggttga |
8787606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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