View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12680_low_7 (Length: 436)
Name: NF12680_low_7
Description: NF12680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12680_low_7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 21 - 436
Target Start/End: Complemental strand, 44575965 - 44575550
Alignment:
| Q |
21 |
aggatttgcaattccgacggtttgtcttgctttctcgataatcatctttctatttggtcgcggcacttacatttacaaaaaacctcaagggagcgttttt |
120 |
Q |
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| T |
44575965 |
aggatttgcaattccgacggtttgtcttgctttctcaataatcatctttctatttggtcgcggcacttacatttacaaaaaacctcaagggagcgttttt |
44575866 |
T |
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| Q |
121 |
acagacatggcaaaggtgatcgttgcagcatgtcgaaaacgcaaacttcagctttcaaatagaactttatatgatcatgtttctacattgtcagaatcag |
220 |
Q |
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| T |
44575865 |
acagacatggcaaaggtgatcgttgcagcatgtcgaaaacgcaaacttcagctttcaaatagaactttatatgatcatgtttctacattgtcagaatcag |
44575766 |
T |
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| Q |
221 |
aaaacattaggcttgttcaaacagacaggttcaagtttcttgataaggcggctataatagctgaaccaagtgaattgaacaaccaaggaattgctaagaa |
320 |
Q |
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| T |
44575765 |
aaaacattaggcttgttcaaacagacaggttcaagtttcttgataaggcggctataatagctgaaccaagtgaattgaacaaccaaggaattgctaagaa |
44575666 |
T |
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| Q |
321 |
tggttggagactttgtagtttgcaacaagtggaacacttgaaatgcttgtttggaattctaccagtatgggtgacaggaatctgttgtttcattgtaatg |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44575665 |
tggttggagactttgtagtttgcaacaagtggaacacttgaaatgcttgtttggaattctaccagtatgggtgacaggaatttgttgtttcattgtaatg |
44575566 |
T |
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| Q |
421 |
gatcagcagagcacat |
436 |
Q |
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| T |
44575565 |
gatcagcagagcacat |
44575550 |
T |
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