View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12680_low_9 (Length: 401)
Name: NF12680_low_9
Description: NF12680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12680_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 4554574 - 4554925
Alignment:
| Q |
1 |
acattaaaaagcagcctgcctttgatcatcctgcattgaaaaatcacaaaattcaggtgaatgttcttcatgtgattccnnnnnnnnnnnnnnnnnacaa |
100 |
Q |
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| T |
4554574 |
acattaaaaaacagcctgcctttgatcatcctgcattgaaaaatcacaaaattcaggtgaatgttcttcatgtgattcctttttttttttttttt-acaa |
4554672 |
T |
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| Q |
101 |
tacttttgtgttaatttatagatgatacactagttgcttgtttgggctttcttttgtgaaagatcaatgtgattttaaaagtatgaaattaatttttaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4554673 |
tacttttgtgttaatttatagatgatacactagttgcttgtttgggctttcttttgtgaaagatcaatgtgattttaaaagtatgaaattaatttttaca |
4554772 |
T |
|
| Q |
201 |
ttctattttgtaaccatgtaattggtgcgaagtatccacggacttgtaccgattactaatctccgcatggaacttgcctggccaactttgacatgtttaa |
300 |
Q |
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| T |
4554773 |
ttctattttgtaaccatgtaattggtgcgaagtatccacggacttgtaccgattactaatctccgcatggaacttgcctggccagctttgacatgtttaa |
4554872 |
T |
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| Q |
301 |
gtgttcttgagtaaattgctttggacatccaaagtttattctaatttggagtt |
353 |
Q |
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| T |
4554873 |
gtgttcttgagtaaattgctttggacatccaaagtttattctaatttgaagtt |
4554925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 385
Target Start/End: Original strand, 4554937 - 4554969
Alignment:
| Q |
353 |
ttttgtctttaaatttgatttttagtctcaaat |
385 |
Q |
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| T |
4554937 |
ttttttctttaaatttgatttttagtctcaaat |
4554969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 43052348 - 43052389
Alignment:
| Q |
204 |
tattttgtaaccatgtaattggtgcgaagtatccacggactt |
245 |
Q |
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| T |
43052348 |
tatttggtaaccatgtcattggtgcgaagtatccactgactt |
43052389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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