View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12681_low_1 (Length: 674)
Name: NF12681_low_1
Description: NF12681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12681_low_1 |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 237 - 655
Target Start/End: Original strand, 42932127 - 42932545
Alignment:
| Q |
237 |
tgtaagtaccttgcctaataaacttttcatgtgatgcataaagtaggtgtttttctcaactaatatcaatatccattgaatgattttaggtatctatgcc |
336 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42932127 |
tgtaagtaccttgcctaataaacttttcatgtgatgcataaagtaggtgttttcctcaactaatatcaatatccattgaatgattttaggtatctttgcc |
42932226 |
T |
|
| Q |
337 |
ctaaagggggttgcagagaaatcaatggttatcctgcagattgttcgtaagttttaaatcatcatgtttctaattgcgtcgtgatgcttatcctgttatc |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42932227 |
ctaaagggggttgcagagaaatcaatggttatcctgcagattgttcgtaagttttaaatcatcatgtttctaattgcgtcgtgatgcttatcctgttatc |
42932326 |
T |
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| Q |
437 |
attttcacaataactaaagttggttgcttcatccttaatcaggtttggaactgtttctgcaaatgtgataatggcacataactcaatgcccaacaagaag |
536 |
Q |
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| T |
42932327 |
attttaacaataactaaagtcggttgcttcatccttaatcaggtttggaactgtttctgcaaatgtgataatggcacataactcaatgcccaacaagaag |
42932426 |
T |
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| Q |
537 |
agaatgtatgtcttagaaacattggcgaatactagtctggtggacgctctttattccccaatcgatattcgcaacaacctatttagtccaaggtaaaata |
636 |
Q |
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| T |
42932427 |
agaatgtatgtcttagaaacattgacgaatactagtttggtggatgctctttattccccaatcgatattcgcaacaacctatttagtccaaggtaaaata |
42932526 |
T |
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| Q |
637 |
ggaatatcttttacttgat |
655 |
Q |
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| T |
42932527 |
ggaatatcttttacttgat |
42932545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 46 - 238
Target Start/End: Original strand, 42930942 - 42931156
Alignment:
| Q |
46 |
tcctccagtagatgcagaaggtagtggcaatgatgggcctattttcggtgagtctgatcccccgtcgccagtggtgatggaggagtggcatgat-gggtc |
144 |
Q |
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| T |
42930942 |
tcctctagtagatgcagaaggtagtggcaatgatgggcctatttccggtgtgtctgatcccccgtcgccagtggtgatggaggagtgccatgatggggtc |
42931041 |
T |
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| Q |
145 |
tcccgaagctgcagctccaatatcgaa---------------------aaatgggagggccagcgcacccaatgatccggcgacagatgacggcggagtg |
223 |
Q |
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| T |
42931042 |
tcccgaagctgcagctccaatatcggaaaatggggtgggaggccatggaaatgggagggccaacgcacccaatgatccggcgacagatgacggcggagtg |
42931141 |
T |
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| Q |
224 |
aggtggtgcgcggtg |
238 |
Q |
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| T |
42931142 |
aggtggtgcgcggtg |
42931156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224 (Bit Score: 122; Significance: 3e-62; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 518 - 655
Target Start/End: Complemental strand, 14363 - 14226
Alignment:
| Q |
518 |
ctcaatgcccaacaagaagagaatgtatgtcttagaaacattggcgaatactagtctggtggacgctctttattccccaatcgatattcgcaacaaccta |
617 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
14363 |
ctcaatgcctaacaagaagagaatgtatgtcttagaaacattgacgaatactagtttggtggatgctctttattccccaatcgatattcgcaacaaccta |
14264 |
T |
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| Q |
618 |
tttagtccaaggtaaaataggaatatcttttacttgat |
655 |
Q |
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| T |
14263 |
tttagtccaaggtaaaataggaatatcttttacttgat |
14226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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