View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12681_low_3 (Length: 369)
Name: NF12681_low_3
Description: NF12681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12681_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 10 - 353
Target Start/End: Original strand, 16385366 - 16385709
Alignment:
| Q |
10 |
gaagaattgagataacaacggagaggaaaagaatcaatgaagtaaaagcgataacaatagcaaaaacagcgattttgctaggcttcattttgtggatcca |
109 |
Q |
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| T |
16385366 |
gaagaattgagataacaacggagaggaaaagaatcaatgaagtaaaagcgataacaatagcaaaaacagcgattttgctaggcttcattttgtggatcca |
16385465 |
T |
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| Q |
110 |
tggtggtgaaagagttgatttggaatggaaatgataacatacaaactgttttttcgtgtctgatgaattgaaaccacagaaaccattgttgttgttgatg |
209 |
Q |
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| T |
16385466 |
cggtggtgaaagagttgatttggaatggaaatgataacatacaaactgttttttcgtgtctgatgaattgaaaccacagaaaccattgttgttgttgatg |
16385565 |
T |
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| Q |
210 |
caatctttacagcttgtgaagtaagtgtcttgtgttaaagcttcatcccactcaagttcaataccttggattagtatttcattgaggtaaacaagaacat |
309 |
Q |
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| T |
16385566 |
cattctttacagtttgtgaagtaagtgtcttgtgttaaagcttcatcccactcaagttcaataccttggattagtatttcattgaggtaaacaagaacat |
16385665 |
T |
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| Q |
310 |
cactttgacaactaggttcattgtctgaaacagaatgatgcatg |
353 |
Q |
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| T |
16385666 |
cactttggcagctaggttcattgtctgaaacagaatgatgcatg |
16385709 |
T |
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