View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12681_low_4 (Length: 342)

Name: NF12681_low_4
Description: NF12681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12681_low_4
NF12681_low_4
[»] chr2 (19 HSPs)
chr2 (18-190)||(11818432-11818604)
chr2 (46-186)||(36641366-36641506)
chr2 (33-190)||(11553321-11553478)
chr2 (33-190)||(33650871-33651028)
chr2 (28-186)||(16206528-16206686)
chr2 (37-186)||(23379867-23380015)
chr2 (11-185)||(2058680-2058854)
chr2 (44-185)||(20661198-20661339)
chr2 (19-160)||(27267907-27268048)
chr2 (33-172)||(14231017-14231156)
chr2 (47-186)||(23761368-23761507)
chr2 (47-186)||(23789512-23789651)
chr2 (21-122)||(44886277-44886378)
chr2 (39-108)||(11502322-11502391)
chr2 (47-182)||(23762505-23762640)
chr2 (149-190)||(26501264-26501305)
chr2 (149-186)||(30848315-30848352)
chr2 (65-134)||(41655380-41655449)
chr2 (139-195)||(7895972-7896028)
[»] chr1 (19 HSPs)
chr1 (18-186)||(24065192-24065360)
chr1 (19-190)||(29115391-29115562)
chr1 (19-186)||(41117169-41117336)
chr1 (29-190)||(5185261-5185422)
chr1 (27-190)||(4614878-4615041)
chr1 (85-190)||(3603510-3603615)
chr1 (28-186)||(30033571-30033729)
chr1 (33-139)||(13288081-13288187)
chr1 (21-190)||(40490003-40490172)
chr1 (90-186)||(6507904-6508000)
chr1 (21-132)||(24083357-24083468)
chr1 (46-185)||(34696097-34696236)
chr1 (39-185)||(21701467-21701613)
chr1 (21-109)||(9361749-9361837)
chr1 (19-185)||(49372298-49372464)
chr1 (19-185)||(52147703-52147869)
chr1 (29-190)||(49702416-49702576)
chr1 (65-186)||(50309337-50309458)
chr1 (149-182)||(28385221-28385254)
[»] chr8 (22 HSPs)
chr8 (18-190)||(2246710-2246882)
chr8 (18-186)||(953649-953817)
chr8 (22-190)||(26931848-26932018)
chr8 (19-186)||(14505701-14505868)
chr8 (29-186)||(37590030-37590187)
chr8 (39-186)||(14657699-14657846)
chr8 (47-182)||(27978753-27978888)
chr8 (47-182)||(28036022-28036157)
chr8 (28-186)||(15990403-15990561)
chr8 (29-186)||(17837147-17837304)
chr8 (45-186)||(34723846-34723987)
chr8 (37-186)||(35285032-35285181)
chr8 (33-185)||(10601088-10601240)
chr8 (39-176)||(1186545-1186682)
chr8 (44-153)||(4518359-4518468)
chr8 (28-176)||(19299024-19299172)
chr8 (46-170)||(42080471-42080595)
chr8 (65-185)||(23558678-23558798)
chr8 (145-186)||(7670232-7670273)
chr8 (149-186)||(13700129-13700166)
chr8 (149-186)||(22897971-22898008)
chr8 (158-190)||(19382633-19382665)
[»] chr4 (20 HSPs)
chr4 (19-190)||(13685988-13686159)
chr4 (33-190)||(37061038-37061195)
chr4 (39-186)||(30190940-30191087)
chr4 (39-186)||(16431348-16431495)
chr4 (37-182)||(16582335-16582480)
chr4 (19-186)||(30859343-30859510)
chr4 (19-186)||(55227592-55227759)
chr4 (33-190)||(54027691-54027848)
chr4 (39-185)||(18878174-18878320)
chr4 (39-183)||(20527775-20527919)
chr4 (39-190)||(4235313-4235464)
chr4 (33-190)||(27087436-27087593)
chr4 (33-190)||(27066335-27066492)
chr4 (33-185)||(12355218-12355370)
chr4 (37-185)||(34301807-34301955)
chr4 (28-176)||(54823658-54823806)
chr4 (76-190)||(4462610-4462723)
chr4 (33-70)||(27066649-27066686)
chr4 (33-70)||(27066843-27066880)
chr4 (146-186)||(11790857-11790897)
[»] chr6 (14 HSPs)
chr6 (21-190)||(23508839-23509008)
chr6 (26-179)||(16416588-16416741)
chr6 (39-186)||(34355737-34355884)
chr6 (39-186)||(1493235-1493382)
chr6 (39-190)||(9959227-9959378)
chr6 (83-176)||(187079-187172)
chr6 (37-186)||(31029126-31029275)
chr6 (33-185)||(30140932-30141084)
chr6 (69-190)||(13768183-13768304)
chr6 (21-101)||(13825454-13825534)
chr6 (21-132)||(10910512-10910623)
chr6 (39-186)||(16890210-16890357)
chr6 (144-185)||(35087841-35087882)
chr6 (149-185)||(6695689-6695725)
[»] chr7 (21 HSPs)
chr7 (18-190)||(33611022-33611194)
chr7 (28-186)||(13014956-13015114)
chr7 (28-186)||(15633218-15633376)
chr7 (27-190)||(48100729-48100892)
chr7 (22-190)||(48770095-48770263)
chr7 (19-186)||(32480195-32480362)
chr7 (49-186)||(3896475-3896612)
chr7 (37-186)||(47081645-47081794)
chr7 (38-186)||(8118792-8118940)
chr7 (44-183)||(24226203-24226342)
chr7 (49-190)||(11343102-11343243)
chr7 (29-186)||(30502496-30502653)
chr7 (21-186)||(17238666-17238831)
chr7 (39-185)||(41601433-41601579)
chr7 (29-133)||(3205177-3205281)
chr7 (39-186)||(27458138-27458285)
chr7 (77-190)||(27810574-27810687)
chr7 (129-190)||(26016618-26016679)
chr7 (49-182)||(3960065-3960198)
chr7 (149-186)||(29961970-29962007)
chr7 (149-190)||(42510026-42510067)
[»] chr5 (18 HSPs)
chr5 (28-186)||(2157770-2157928)
chr5 (25-190)||(19237652-19237811)
chr5 (78-190)||(23622542-23622654)
chr5 (22-190)||(36044900-36045068)
chr5 (19-186)||(22292359-22292526)
chr5 (19-185)||(19741524-19741690)
chr5 (49-190)||(29955453-29955594)
chr5 (33-185)||(29754948-29755099)
chr5 (28-186)||(18759705-18759862)
chr5 (33-182)||(5335206-5335355)
chr5 (46-142)||(40299909-40300005)
chr5 (28-183)||(28246246-28246405)
chr5 (104-185)||(13948783-13948864)
chr5 (142-185)||(16088654-16088697)
chr5 (160-190)||(16569540-16569570)
chr5 (39-120)||(34919988-34920069)
chr5 (158-186)||(7871937-7871965)
chr5 (39-95)||(16088569-16088625)
[»] chr3 (24 HSPs)
chr3 (28-186)||(16739423-16739581)
chr3 (27-190)||(18357095-18357259)
chr3 (18-190)||(49499389-49499561)
chr3 (19-186)||(6006028-6006195)
chr3 (91-189)||(35906922-35907020)
chr3 (37-186)||(8566012-8566161)
chr3 (78-195)||(36144765-36144882)
chr3 (19-186)||(17790132-17790299)
chr3 (19-186)||(19098574-19098741)
chr3 (51-185)||(29372946-29373080)
chr3 (29-190)||(18342623-18342786)
chr3 (28-186)||(31228227-31228385)
chr3 (39-185)||(31935240-31935386)
chr3 (47-185)||(31973506-31973644)
chr3 (37-182)||(31809160-31809305)
chr3 (39-175)||(31660977-31661113)
chr3 (39-186)||(19602912-19603059)
chr3 (28-186)||(53437525-53437682)
chr3 (29-186)||(53394825-53394981)
chr3 (47-182)||(38015060-38015194)
chr3 (149-186)||(4479866-4479903)
chr3 (149-186)||(14485654-14485691)
chr3 (149-186)||(16877963-16878000)
chr3 (149-182)||(45004299-45004332)
[»] scaffold0341 (2 HSPs)
scaffold0341 (90-186)||(1929-2025)
scaffold0341 (90-186)||(9585-9681)
[»] scaffold0031 (1 HSPs)
scaffold0031 (24-195)||(44461-44633)
[»] scaffold0040 (1 HSPs)
scaffold0040 (29-186)||(62481-62638)
[»] scaffold0643 (1 HSPs)
scaffold0643 (33-185)||(1042-1194)
[»] scaffold0019 (1 HSPs)
scaffold0019 (46-182)||(73335-73471)
[»] scaffold0011 (1 HSPs)
scaffold0011 (21-132)||(191051-191162)
[»] scaffold0789 (1 HSPs)
scaffold0789 (39-185)||(4210-4356)
[»] scaffold0013 (1 HSPs)
scaffold0013 (33-143)||(42466-42576)
[»] scaffold0198 (1 HSPs)
scaffold0198 (127-186)||(21815-21874)


Alignment Details
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 11818604 - 11818432
Alignment:
Q  18 ctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagcta 117  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11818604 ctgtttagttctttctttaccaactctagggtggagtttgttaggcgacaagcaaacgaggttgctcatgttcttgcaggagaagccacgttactagcta 11818505  T
Q  118 gtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 190  Q
    |||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  11818504 gtcccgttatttattttcagatacccaattatattgaacctcttattattaatgaaatgctataagcatattt 11818432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 46 - 186
Target Start/End: Original strand, 36641366 - 36641506
Alignment:
Q  46 gggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaa 145  Q
    |||||||||||||||||| |||||| |||||||||||||||| |||||||  |||| |||| ||||||||||||||||||||||||||| | ||||||||    
T  36641366 gggtggagtttgttaggcgacaagccaacgaggttgctcatgctcttgcaaaagaagccacattactagctagtcccgttgtttattttgagatacccaa 36641465  T
Q  146 ttatattgaacctattattattaatgaaatgttataagcat 186  Q
    ||||||||||  ||||||||| ||||||||  |||||||||    
T  36641466 ttatattgaaattattattatcaatgaaatactataagcat 36641506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 33 - 190
Target Start/End: Original strand, 11553321 - 11553478
Alignment:
Q  33 tttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttatt 132  Q
    |||||||||| |||||||||||||  | ||| |||||| || ||||||| ||||||||| ||||||||| |||| |||||||||||||||    ||||||    
T  11553321 tttaccaactctagggtggagtttactcggcgacaagctaatgaggttgatcatgttctcgcaggagaagccacattactagctagtcccaccatttatt 11553420  T
Q  133 ttcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 190  Q
    |||| |||||| | ||||||||| || ||||||||||||||||  |||||||||||||    
T  11553421 ttcatatacccgaatatattgaaactcttattattaatgaaatactataagcatattt 11553478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 33 - 190
Target Start/End: Original strand, 33650871 - 33651028
Alignment:
Q  33 tttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttatt 132  Q
    |||||||||| ||| ||| ||||||  |||||||||||||| | ||||| |||||| ||||||| ||||  |||||| ||||||||||||||||||||||    
T  33650871 tttaccaactctagagtgaagtttgccaggcaacaagcaaatgcggttgttcatgtgcttgcagaagaagtcacgtttctagctagtcccgttgtttatt 33650970  T
Q  133 ttcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 190  Q
    || |||||||||||  |||||||  | ||||||||||||||||| | ||| |||||||    
T  33650971 ttaacatacccaatcgtattgaatatcttattattaatgaaatgctctaaacatattt 33651028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 28 - 186
Target Start/End: Original strand, 16206528 - 16206686
Alignment:
Q  28 ctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgt 127  Q
    |||||||| | |||| |||||||||||||||||||| |||||| |||| ||||||||||| ||||||| | ||  ||||||   ||||||||||||  ||    
T  16206528 ctttcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttagctagtcccgccgt 16206627  T
Q  128 ttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    ||||||| | |||||||||| ||||||| || ||||||| ||||||||| |||||||||    
T  16206628 ttattttaatatacccaattgtattgaaactcttattataaatgaaatgctataagcat 16206686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 37 - 186
Target Start/End: Original strand, 23379867 - 23380015
Alignment:
Q  37 ccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttca 136  Q
    |||||| ||||||||||||| |||||  ||| || |||||||||| | ||| ||| ||| |||||  ||| |||||||||||| ||| |||||||||| |    
T  23379867 ccaactctagggtggagtttattaggtgaca-gccaacgaggttgtttatgctctcgcaagagaagtcacattactagctagttccgctgtttattttaa 23379965  T
Q  137 catacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
     |||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  23379966 aatacccaattgtattgaaactattattattaatgaaatgttataagcat 23380015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 185
Target Start/End: Original strand, 2058680 - 2058854
Alignment:
Q  11 tcgttcactgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgtta 110  Q
    ||||| ||| ||||| ||||||||| | |||| || ||||||||||||||||| |||| | |||  |||| |||||| ||||||| ||||| | ||||||    
T  2058680 tcgtttactatttagctctttcttttcgaactctaaggtggagtttgttaggcgacaaaccaacacggttactcatgctcttgcaagagaaactacgtta 2058779  T
Q  111 ctagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagca 185  Q
     |||||| ||||| |||||||| | | |||||||||| ||||||| || ||||||| ||| ||||||||||||||    
T  2058780 ttagctaatcccgctgtttattatgatatacccaattgtattgaaactcttattatcaattaaatgttataagca 2058854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 44 - 185
Target Start/End: Original strand, 20661198 - 20661339
Alignment:
Q  44 tagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacataccc 143  Q
    |||||||||||||||||||  |||||  |||  ||||||||||| ||||||| ||||  ||||||||||||||||||||| ||| |||| | ||||||||    
T  20661198 tagggtggagtttgttaggtgacaagttaacagggttgctcatgctcttgcaagagacaccacgttactagctagtcccgctgtctattatgacataccc 20661297  T
Q  144 aattatattgaacctattattattaatgaaatgttataagca 185  Q
    |||| ||||||| || | ||||| ||||||||| ||||||||    
T  20661298 aattgtattgaatctttgattatcaatgaaatgctataagca 20661339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 27268048 - 27267907
Alignment:
Q  19 tgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctag 118  Q
    |||||| |||||| ||| | |||| |||||||||||||||||||  |||||| |||||||||||||||   |||||| ||||| |||||||||||| |||    
T  27268048 tgtttatttctttattttctaactctagggtggagtttgttaggtgacaagctaacgaggttgctcatacacttgcaagagaagccacgttactagttag 27267949  T
Q  119 tcccgttgtttattttcacatacccaattatattgaacctat 160  Q
    |||| ||||||||| | | |||||||||| ||||||| ||||    
T  27267948 tcccattgtttattatgaaatacccaattgtattgaaactat 27267907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 172
Target Start/End: Original strand, 14231017 - 14231156
Alignment:
Q  33 tttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttatt 132  Q
    |||||||||| ||| |||||||||||||||| |||||| || | ||| |||||   ||||||| | ||| |||| || || |||||||||||| | ||||    
T  14231017 tttaccaactctagagtggagtttgttaggcgacaagctaatgtggtggctcacactcttgcaagggaagccacatttctcgctagtcccgttatctatt 14231116  T
Q  133 ttcacatacccaattatattgaacctattattattaatga 172  Q
    |||| |||||||||| ||||||| || | |||||||||||    
T  14231117 ttcatatacccaattgtattgaaactttgattattaatga 14231156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 47 - 186
Target Start/End: Complemental strand, 23761507 - 23761368
Alignment:
Q  47 ggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaat 146  Q
    ||||||||||||||||| ||||||||||| | ||||||||| ||||||| ||||  ||  ||||||  |||||||||  ||||||| | | |||||| ||    
T  23761507 ggtggagtttgttaggcgacaagcaaacgggattgctcatgctcttgcaagagataccttgttactcactagtcccgccgtttattatgatatacccgat 23761408  T
Q  147 tatattgaacctattattattaatgaaatgttataagcat 186  Q
    | ||||||| || | ||||| ||||||||| |||||||||    
T  23761407 tgtattgaaactctgattatcaatgaaatgctataagcat 23761368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 47 - 186
Target Start/End: Complemental strand, 23789651 - 23789512
Alignment:
Q  47 ggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaat 146  Q
    ||||||||||||||||| ||||||||||| | ||||||||| ||||||| ||||  ||  ||||||  |||||||||  ||||||| | | |||||| ||    
T  23789651 ggtggagtttgttaggcgacaagcaaacgggattgctcatgctcttgcaagagataccttgttactcactagtcccgccgtttattatgatatacccgat 23789552  T
Q  147 tatattgaacctattattattaatgaaatgttataagcat 186  Q
    | ||||||| || | ||||| ||||||||| |||||||||    
T  23789551 tgtattgaaactctgattatcaatgaaatgctataagcat 23789512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 44886277 - 44886378
Alignment:
Q  21 tttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtc 120  Q
    ||||||||||||||| | |||| |||||||||||||||||||| |||||  |||| |||||||||||  |||||| ||||| |||||||  |||||| ||    
T  44886277 tttagttctttcttttctaactctagggtggagtttgttaggcgacaagtcaacgcggttgctcatgcacttgcaagagaagccacgttcttagctaatc 44886376  T
Q  121 cc 122  Q
    ||    
T  44886377 cc 44886378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 11502322 - 11502391
Alignment:
Q  39 aactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgt 108  Q
    |||| |||||||||||||||||||| |||||| |||| ||||||||||  ||||||| ||||| ||||||    
T  11502322 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcatactcttgcaagagaagccacgt 11502391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 182
Target Start/End: Complemental strand, 23762640 - 23762505
Alignment:
Q  47 ggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaat 146  Q
    ||||||||||||||||| |||||| |||| | |||||| || ||||||| |||   ||  |||||| ||||||||||  ||||||| | | |||||| ||    
T  23762640 ggtggagtttgttaggcgacaagctaacgggattgctcgtgctcttgcaagagtggccttgttacttgctagtcccgccgtttattataatatacccgat 23762541  T
Q  147 tatattgaacctattattattaatgaaatgttataa 182  Q
    | ||||||| || | ||||| ||||||||| |||||    
T  23762540 tgtattgaaactctgattatcaatgaaatgctataa 23762505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 190
Target Start/End: Complemental strand, 26501305 - 26501264
Alignment:
Q  149 tattgaacctattattattaatgaaatgttataagcatattt 190  Q
    |||||||||||||||||| ||||||||| ||||| |||||||    
T  26501305 tattgaacctattattataaatgaaatgctataaacatattt 26501264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 30848315 - 30848352
Alignment:
Q  149 tattgaacctattattattaatgaaatgttataagcat 186  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  30848315 tattgaatctattattattaatgaaatgctataagcat 30848352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 134
Target Start/End: Complemental strand, 41655449 - 41655380
Alignment:
Q  65 acaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttatttt 134  Q
    ||||| ||| ||||||| ||| |  |||||||||||| |||| ||| |||||||||||||| ||||||||    
T  41655449 acaagaaaatgaggttggtcacgcacttgcaggagaagccacattattagctagtcccgttatttatttt 41655380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 7896028 - 7895972
Alignment:
Q  139 tacccaattatattgaacctattattattaatgaaatgttataagcatatttgcttt 195  Q
    ||||| ||| ||||||  || |||||| |||||||||||||||||||||||| ||||    
T  7896028 tacccgattgtattgactctgttattactaatgaaatgttataagcatattttcttt 7895972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 141; Significance: 7e-74; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 24065192 - 24065360
Alignment:
Q  18 ctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagcta 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24065192 ctgtttagttctttctttaccaactttagggtggagtttgttaggcgacaagcaaacgaggttgctcatgttcttgcaggagaagccacgttactagcta 24065291  T
Q  118 gtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    |||||||||||||||||||||||||| ||| |||||||| | ||||||||||||||||| |||||||||    
T  24065292 gtcccgttgtttattttcacatacccgattgtattgaacttcttattattaatgaaatgctataagcat 24065360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 29115391 - 29115562
Alignment:
Q  19 tgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctag 118  Q
    |||| ||||||||||||||||||| ||||||| |||||||||| | |||||||||||||||||||||||||| || | ||||   |||||||||||||||    
T  29115391 tgttcagttctttctttaccaactctagggtgtagtttgttagacgacaagcaaacgaggttgctcatgttcctgtaagagaggtcacgttactagctag 29115490  T
Q  119 tcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 190  Q
    ||  |||||||||||||| |||||| ||| ||| |||||| |||||||||||| |||| |||||||||||||    
T  29115491 tcatgttgtttattttcatatacccgattgtatggaacctcttattattaatgcaatgatataagcatattt 29115562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 41117169 - 41117336
Alignment:
Q  19 tgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctag 118  Q
    |||||| | |||| ||| |||||| | |||||||||||||||||| |||||| || ||||||||||||| ||||||| ||||| ||||||||||||||||    
T  41117169 tgtttactgctttattttccaactctcgggtggagtttgttaggcgacaagccaatgaggttgctcatgctcttgcaagagaagccacgttactagctag 41117268  T
Q  119 tcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    ||||   ||||||||| | |||||||||| |||| || |||||||||| ||||||||| |||||||||    
T  41117269 tcccaccgtttattttgagatacccaattgtattcaaactattattatcaatgaaatgctataagcat 41117336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 29 - 190
Target Start/End: Complemental strand, 5185422 - 5185261
Alignment:
Q  29 tttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtt 128  Q
    |||||||||||||| ||||||||||||||||| || |||| | || ||||||| ||||||||||||| |||||  ||| |||| |||||||||||   ||    
T  5185422 tttctttaccaactctagggtggagtttgttaagcgacaaaccaatgaggttgttcatgttcttgcaagagaagtcacattaccagctagtcccgccatt 5185323  T
Q  129 tattttcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 190  Q
    |||||| | |||||| | |||||||||  | |||||||||||||||||||||||||||||||    
T  5185322 tatttttatatacccgaatatattgaatatcttattattaatgaaatgttataagcatattt 5185261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 27 - 190
Target Start/End: Original strand, 4614878 - 4615041
Alignment:
Q  27 tctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttg 126  Q
    ||||| |||||||||| |||||||||||||| ||||| |||| |||| | |||||||||||| ||||||| |||| ||||||| ||| ||||| ||||||    
T  4614878 tctttttttaccaactctagggtggagtttgctaggcgacaaacaaatgtggttgctcatgtgcttgcagaagaagccacgtttctaactagttccgttg 4614977  T
Q  127 tttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 190  Q
    || ||||| ||||| || ||| ||||||| ||  ||||||||||||||| |||||| |||||||    
T  4614978 ttgattttaacataaccgattgtattgaatctcgtattattaatgaaattttataaacatattt 4615041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 85 - 190
Target Start/End: Complemental strand, 3603615 - 3603510
Alignment:
Q  85 atgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagc 184  Q
    ||||||||||||||||  ||||||||||||||| |||||||||||||||||| |||| | ||| |||||||||| ||||||||||||||||||||||| |    
T  3603615 atgttcttgcaggagaggccacgttactagctactcccgttgtttattttcatatacacgattgtattgaacctcttattattaatgaaatgttataaac 3603516  T
Q  185 atattt 190  Q
    ||||||    
T  3603515 atattt 3603510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 28 - 186
Target Start/End: Original strand, 30033571 - 30033729
Alignment:
Q  28 ctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgt 127  Q
    |||||||| | |||| |||||||||||||||||||| |||||| | || ||||||||||| ||||||| | ||  ||||||   ||||||||||||  ||    
T  30033571 ctttcttttctaactctagggtggagtttgttaggcgacaagccagcgtggttgctcatgctcttgcaagggaggccacgtctttagctagtcccgccgt 30033670  T
Q  128 ttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    ||||||| | |||||||||||||||||| || ||||||| ||||||||| |||||||||    
T  30033671 ttattttaatatacccaattatattgaaactcttattataaatgaaatgctataagcat 30033729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 13288081 - 13288187
Alignment:
Q  33 tttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttatt 132  Q
    |||||||||| |||||||||||||| ||||| |||| |||| | |||||||||||| |||||||||||| |||  || ||||||||||||||||||||||    
T  13288081 tttaccaactctagggtggagtttgctaggcgacaaacaaatgcggttgctcatgtgcttgcaggagaagccatatttctagctagtcccgttgtttatt 13288180  T
Q  133 ttcacat 139  Q
    || ||||    
T  13288181 ttaacat 13288187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 40490172 - 40490003
Alignment:
Q  21 tttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtc 120  Q
    ||||| || |||||| | |||| |||||||||||||||||||| |||| | || ||||| ||||||| ||||||| |||||  | ||||||||| |||||    
T  40490172 tttagctcattcttttctaactctagggtggagtttgttaggcgacaaaccaatgaggtcgctcatgctcttgcaagagaagtcgcgttactagttagtc 40490073  T
Q  121 ccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 190  Q
    ||| |||||||||| | |||||  | ||||||||| || ||||||| |||||||||  |||| |||||||    
T  40490072 ccgctgtttattttgatataccggaatatattgaaactcttattatcaatgaaatgacataaacatattt 40490003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 90 - 186
Target Start/End: Complemental strand, 6508000 - 6507904
Alignment:
Q  90 cttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    ||||||| ||||  ||||||||||||||||| | ||||||||||| | |||||||| | |||||||||| |||||||||||||||||||||||||||    
T  6508000 cttgcagaagaagtcacgttactagctagtctctttgtttattttaatatacccaaatgtattgaacctgttattattaatgaaatgttataagcat 6507904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 24083357 - 24083468
Alignment:
Q  21 tttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtc 120  Q
    ||||||||||||||| | |||| || ||||||||||||||||| |||||| |||| |||||||||||  |||||| ||||| |||||||  |||||||||    
T  24083357 tttagttctttcttttctaactctacggtggagtttgttaggcgacaagccaacgcggttgctcatgcacttgcaagagaagccacgttcttagctagtc 24083456  T
Q  121 ccgttgtttatt 132  Q
    ||| | ||||||    
T  24083457 ccgctatttatt 24083468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 46 - 185
Target Start/End: Complemental strand, 34696236 - 34696097
Alignment:
Q  46 gggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaa 145  Q
    |||||||||||| ||||  ||||| ||| | ||||||||||  ||| | ||||||  ||||||| |||||||||| ||||||||||||||| |||||| |    
T  34696236 gggtggagtttgctaggagacaagaaaatgtggttgctcatactctcgaaggagagaccacgtttctagctagtctcgttgtttattttcatatacccca 34696137  T
Q  146 ttatattgaacctattattattaatgaaatgttataagca 185  Q
    || ||||||| || | ||||||||||| ||| ||||||||    
T  34696136 ttgtattgaaactttgattattaatgatatgatataagca 34696097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 39 - 185
Target Start/End: Complemental strand, 21701613 - 21701467
Alignment:
Q  39 aactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcaca 138  Q
    |||| |||||||||||||||||||| | |||| |||| ||||||||||| |||| || ||||  ||||||   ||||||||||||  ||||||| | | |    
T  21701613 aactctagggtggagtttgttaggcgataagccaacgtggttgctcatgctctttcacgagaggccacgtctttagctagtcccgccgtttattatgata 21701514  T
Q  139 tacccaattatattgaacctattattattaatgaaatgttataagca 185  Q
    ||| ||||| ||||||| || |||| |||||||||||| ||||||||    
T  21701513 tactcaattgtattgaaactcttatgattaatgaaatgctataagca 21701467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 9361749 - 9361837
Alignment:
Q  21 tttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgtt 109  Q
    ||||||||||||||| | |||| |||||||||||||||||||| |||||| |||| |||||||||||  |||||| ||||| |||||||    
T  9361749 tttagttctttcttttctaactctagggtggagtttgttaggcgacaagccaacgcggttgctcatgcacttgcaagagaagccacgtt 9361837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 49372298 - 49372464
Alignment:
Q  19 tgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctag 118  Q
    |||||| |||||| ||| | | || |||| || |||||||||| | |||| | |||  |||||||||||  |||||| || || |||||||| || ||||    
T  49372298 tgtttatttctttattttctagctataggatgaagtttgttagacgacaaactaacatggttgctcatgcacttgcaagaaaagccacgttaatatctag 49372397  T
Q  119 tcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagca 185  Q
    ||||  |||||||| | | |||||||||| ||||||| || ||||||| ||||||||| ||||||||    
T  49372398 tcccactgtttattataaaatacccaattgtattgaaactcttattatcaatgaaatgctataagca 49372464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 52147869 - 52147703
Alignment:
Q  19 tgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctag 118  Q
    |||||| | |||| ||| |||||| || |||| ||||||||| || |||||| |||  |||||| |||  ||||||| ||||| ||| ||||||||||||    
T  52147869 tgtttactgctttattttccaactctaaggtgaagtttgttatgcgacaagctaacagggttgcccattctcttgcaagagaagccatgttactagctag 52147770  T
Q  119 tcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagca 185  Q
    || ||  ||||||| | | |||| || || ||||||| || ||||||| ||| ||||  ||||||||    
T  52147769 tcgcgcggtttattatgaaatactcatttgtattgaaactcttattatcaataaaatactataagca 52147703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 190
Target Start/End: Original strand, 49702416 - 49702576
Alignment:
Q  29 tttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtt 128  Q
    |||||||||||||| |||| || |||||||||||  ||| |  |||| |||| |||||||| |||||| |||  | |  ||||||  || |||  |||||    
T  49702416 tttctttaccaactctaggatgaagtttgttaggtgacatgtcaacggggtttctcatgttattgcagaagagac-atattactaaataatccaattgtt 49702514  T
Q  129 tattttcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 190  Q
    |||||| | |||||  ||| |||||||||| ||||||||||||| ||| ||||| |||||||    
T  49702515 tattttaatataccagattgtattgaacctcttattattaatgagatgctataaacatattt 49702576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 186
Target Start/End: Original strand, 50309337 - 50309458
Alignment:
Q  65 acaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattatt 164  Q
    |||||| |||||||||||||| | ||||||  ||||  ||||||   |||||||  |||| ||||||| | |||||| ||||  ||||||| | ||||||    
T  50309337 acaagccaacgaggttgctcacgctcttgcgagagataccacgtccttagctagctccgtagtttattatgacatactcaatagtattgaatccattatt 50309436  T
Q  165 attaatgaaatgttataagcat 186  Q
    |||||||||||| | |||||||    
T  50309437 attaatgaaatgctttaagcat 50309458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 182
Target Start/End: Original strand, 28385221 - 28385254
Alignment:
Q  149 tattgaacctattattattaatgaaatgttataa 182  Q
    ||||||| ||||||||||||||||||||||||||    
T  28385221 tattgaaactattattattaatgaaatgttataa 28385254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 2246882 - 2246710
Alignment:
Q  18 ctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagcta 117  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||    
T  2246882 ctgtttaattctttctttaccaactctagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaagtcatgttactagcta 2246783  T
Q  118 gtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 190  Q
    |||  ||||||||||||||||||||  ||| |||||||||| ||||||||||||||||| |||||||||||||    
T  2246782 gtcatgttgtttattttcacatacctgattgtattgaacctcttattattaatgaaatgctataagcatattt 2246710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 953649 - 953817
Alignment:
Q  18 ctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagcta 117  Q
    |||||||||||||||||||  || ||||||||||||||||||  || ||||||||||||| |||||||||||||||||||||||  ||||||||||||||    
T  953649 ctgtttagttctttctttattaattttagggtggagtttgtttagcgacaagcaaacgagtttgctcatgttcttgcaggagaagtcacgttactagcta 953748  T
Q  118 gtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    ||||||||||||||||||||||| | |||| |||||||||| ||||||||||| ||||| ||| |||||    
T  953749 gtcccgttgtttattttcacatatctaattgtattgaacctcttattattaataaaatgctatgagcat 953817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 22 - 190
Target Start/End: Complemental strand, 26932018 - 26931848
Alignment:
Q  22 ttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcc 121  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||| || || |||| ||||||||||||||||||| |||| |||||||||||||     
T  26932018 ttagttctttctttaccaactctagggtagagtttgttaggcaacaagccaatgaagttgttcatgttcttgcaggagaagccacattactagctagtct 26931919  T
Q  122 cgttgtttattttcacatacccaattatattgaacctattat--tattaatgaaatgttataagcatattt 190  Q
    ||   |||||||||| ||| || | | ||||||| || ||||  ||||||||||||| |||||||||||||    
T  26931918 cgccatttattttcatatatccgaatgtattgaatctcttattatattaatgaaatgatataagcatattt 26931848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 14505701 - 14505868
Alignment:
Q  19 tgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctag 118  Q
    |||| ||| |||||||| | |||| |||||||||||||||||||| |||||| |||| ||||||||||| ||||||| | ||  ||||||   |||||||    
T  14505701 tgttcagtactttcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttagctag 14505800  T
Q  119 tcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    |||||  ||||||||| | |||||||||| ||||||| || ||||||| ||||||||| |||||||||    
T  14505801 tcccgccgtttattttaatatacccaattgtattgaaactcttattataaatgaaatgctataagcat 14505868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 29 - 186
Target Start/End: Complemental strand, 37590187 - 37590030
Alignment:
Q  29 tttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtt 128  Q
    ||||||| | |||| |||||||||||||||||||| |||||| |||| ||||||||||| ||||||| | ||  ||||||   |||||||| |||  |||    
T  37590187 tttcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttagctagttccgccgtt 37590088  T
Q  129 tattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    |||||| | |||||||||| ||||||| || ||||||||||||||||| |||||||||    
T  37590087 tattttaatatacccaattgtattgaaactcttattattaatgaaatgctataagcat 37590030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 39 - 186
Target Start/End: Complemental strand, 14657846 - 14657699
Alignment:
Q  39 aactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcaca 138  Q
    |||| |||||||||||||||||||| |||||| ||| ||||  |||||| ||||||| ||||| ||||||||||||| |||| | ||||||||||| | |    
T  14657846 aactctagggtggagtttgttaggcgacaagccaacaaggtatctcatgctcttgcaagagaagccacgttactagccagtcacattgtttattttgata 14657747  T
Q  139 tacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    |||| |||| ||||||| || |||| || ||||||||| |||||||||    
T  14657746 tacctaattgtattgaaactcttataatcaatgaaatgctataagcat 14657699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 47 - 182
Target Start/End: Original strand, 27978753 - 27978888
Alignment:
Q  47 ggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaat 146  Q
    ||||||||||||||||| |||||| |||| ||||||||||| ||||||| ||||  ||||||   ||||||||||| | ||||||| | | |||||||||    
T  27978753 ggtggagtttgttaggctacaagccaacgcggttgctcatgctcttgcacgagaggccacgtctttagctagtcccttcgtttattatgatatacccaat 27978852  T
Q  147 tatattgaacctattattattaatgaaatgttataa 182  Q
    | ||||||| ||||||| ||||||||||||||||||    
T  27978853 tttattgaaactattatgattaatgaaatgttataa 27978888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 47 - 182
Target Start/End: Original strand, 28036022 - 28036157
Alignment:
Q  47 ggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaat 146  Q
    ||||||||||||||||| |||||| |||| ||||||||||| ||||||| ||||  ||||||   ||||||||||| | ||||||| | | |||||||||    
T  28036022 ggtggagtttgttaggctacaagccaacgcggttgctcatgctcttgcacgagaggccacgtctttagctagtcccttcgtttattatgatatacccaat 28036121  T
Q  147 tatattgaacctattattattaatgaaatgttataa 182  Q
    | ||||||| ||||||| ||||||||||||||||||    
T  28036122 tttattgaaactattatgattaatgaaatgttataa 28036157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 186
Target Start/End: Complemental strand, 15990561 - 15990403
Alignment:
Q  28 ctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgt 127  Q
    |||||||| | |||| |||||||||||||||||||| ||||||  ||| ||||||||||| ||||||| | ||  ||||||   ||||||||||||  ||    
T  15990561 ctttcttttctaactctagggtggagtttgttaggcgacaagcctacgtggttgctcatgctcttgcaagggaggccacgtctttagctagtcccgccgt 15990462  T
Q  128 ttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    ||||||| | |||||||||| ||||||| || ||||||| ||||||||| |||||||||    
T  15990461 ttattttaatatacccaattgtattgaaactcttattataaatgaaatgctataagcat 15990403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 29 - 186
Target Start/End: Complemental strand, 17837304 - 17837147
Alignment:
Q  29 tttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtt 128  Q
    ||||||| | |||| |||||||||||||||||||| |||||| |||| ||||||||||  ||||||| ||||| ||||||   |||||||||| |  |||    
T  17837304 tttcttttctaactctagggtggagtttgttaggcgacaagccaacgcggttgctcatactcttgcaagagaagccacgtctttagctagtcctgccgtt 17837205  T
Q  129 tattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    |||||  | |||||| ||||||||||| || | ||||||||||||||| |||||||||    
T  17837204 tatttcgatatacccgattatattgaatctttaattattaatgaaatgctataagcat 17837147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 186
Target Start/End: Complemental strand, 34723987 - 34723846
Alignment:
Q  45 agggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacataccca 144  Q
    ||||||||||||||||||| |||||| |||| ||||||||||  ||||||| ||||| ||||||   ||||||||| ||  ||||||| | | |||||||    
T  34723987 agggtggagtttgttaggcgacaagccaacgtggttgctcatactcttgcaagagaagccacgtctttagctagtctcgccgtttattatgatataccca 34723888  T
Q  145 attatattgaacctattattattaatgaaatgttataagcat 186  Q
    ||| ||||||| ||||||| |||||||||||| | |||||||    
T  34723887 attgtattgaatctattatgattaatgaaatgctctaagcat 34723846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 37 - 186
Target Start/End: Original strand, 35285032 - 35285181
Alignment:
Q  37 ccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttca 136  Q
    |||||| |||||||||||||||||||| |||||| |||| ||| ||||||  ||||||| ||||  ||||||   |||||||||||| ||| |||| | |    
T  35285032 ccaactctagggtggagtttgttaggcgacaagctaacgcggtggctcatactcttgcacgagaggccacgtccttagctagtcccgctgtctattatga 35285131  T
Q  137 catacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
     |||||||||| ||||||  ||||||| || ||||||||| |||||||||    
T  35285132 tatacccaattgtattgaggctattatgatcaatgaaatgctataagcat 35285181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 185
Target Start/End: Original strand, 10601088 - 10601240
Alignment:
Q  33 tttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttatt 132  Q
    |||||||||| |  ||||||||||||| ||| |||||| || | ||| |||||   ||| ||||| ||| |||| || || |||||||||  | |||||     
T  10601088 tttaccaactctcaggtggagtttgttcggcgacaagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccactatttatc 10601187  T
Q  133 ttcacatacccaattatattgaacctattattattaatgaaatgttataagca 185  Q
    |||| |||||||||||||||||| || | |||| |||||||||| ||||||||    
T  10601188 ttcatatacccaattatattgaaactttgattactaatgaaatgctataagca 10601240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 176
Target Start/End: Original strand, 1186545 - 1186682
Alignment:
Q  39 aactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcaca 138  Q
    |||| |||||||||||||||||||| |||||| |||| ||||||||||| ||||||   |||   |||||   |||||| ||   | ||||||||| | |    
T  1186545 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgctaaagagatcacgtctttagctaatcgaatcgtttattttaata 1186644  T
Q  139 tacccaattatattgaacctattattattaatgaaatg 176  Q
    ||  ||||||||||||| || |||||||||||||||||    
T  1186645 tattcaattatattgaaacttttattattaatgaaatg 1186682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 153
Target Start/End: Original strand, 4518359 - 4518468
Alignment:
Q  44 tagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacataccc 143  Q
    |||||||||||||||||||| |||||| |||| ||| ||||||| ||||||| ||||  ||||||   |||||||||||| ||| |||| | | ||| ||    
T  4518359 tagggtggagtttgttaggcgacaagctaacgcggtggctcatgctcttgcacgagagaccacgtctttagctagtcccgctgtctattatgatatatcc 4518458  T
Q  144 aattatattg 153  Q
    |||| |||||    
T  4518459 aattgtattg 4518468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 19299172 - 19299024
Alignment:
Q  28 ctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgt 127  Q
    |||||||| | |||| ||||||| ||||||||| || | |||| ||||  |||| ||||| |||| || ||||   |||||   ||||||||||||  ||    
T  19299172 ctttcttttctaactctagggtgaagtttgttaagcgataagccaacgtagttgttcatgctcttacaagagaggtcacgtctttagctagtcccgccgt 19299073  T
Q  128 ttattttcacatacccaattatattgaacctattattattaatgaaatg 176  Q
    ||||||| | |||||||||| |||||||  | |||||||||||||||||    
T  19299072 ttattttgatatacccaattgtattgaaatttttattattaatgaaatg 19299024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 46 - 170
Target Start/End: Original strand, 42080471 - 42080595
Alignment:
Q  46 gggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaa 145  Q
    |||||||||||| ||||  ||||||||| | | ||||||||  ||||||||||||  |||| ||  |||| | |||||||||||||||||| | ||| ||    
T  42080471 gggtggagtttgctaggagacaagcaaatgtgattgctcatactcttgcaggagagaccacatttgtagccaatcccgttgtttattttcatacaccaaa 42080570  T
Q  146 ttatattgaacctattattattaat 170  Q
    |||||||| | || | |||||||||    
T  42080571 ttatattggaactttgattattaat 42080595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 185
Target Start/End: Original strand, 23558678 - 23558798
Alignment:
Q  65 acaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattatt 164  Q
    ||||||||| | ||||| ||||  ||||||||||||    || || ||||||||||||  | ||||||||||||||||| | | ||||||  || | |||    
T  23558678 acaagcaaatgtggttgttcatactcttgcaggagagataacatttctagctagtcccactatttattttcacataccccaatgtattgagactttgatt 23558777  T
Q  165 attaatgaaatgttataagca 185  Q
     ||||||||||||||||||||    
T  23558778 gttaatgaaatgttataagca 23558798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 7670273 - 7670232
Alignment:
Q  145 attatattgaacctattattattaatgaaatgttataagcat 186  Q
    ||||||||||| |||||||||||||||||||| |||| ||||    
T  7670273 attatattgaatctattattattaatgaaatgatatacgcat 7670232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 13700166 - 13700129
Alignment:
Q  149 tattgaacctattattattaatgaaatgttataagcat 186  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  13700166 tattgaaactattattattaatgaaatgctataagcat 13700129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 22897971 - 22898008
Alignment:
Q  149 tattgaacctattattattaatgaaatgttataagcat 186  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  22897971 tattgaaactattattattaatgaaatgctataagcat 22898008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 190
Target Start/End: Complemental strand, 19382665 - 19382633
Alignment:
Q  158 tattattattaatgaaatgttataagcatattt 190  Q
    ||||||||||||||||||| |||||||||||||    
T  19382665 tattattattaatgaaatgctataagcatattt 19382633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 13685988 - 13686159
Alignment:
Q  19 tgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctag 118  Q
    |||| |||||||| |||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||  |||||||||||||||    
T  13685988 tgttcagttctttgtttaccaactctagggtggagtttgttaggcgacaagcaaacggggttgctcatgttcttgcaagagaagtcacgttactagctag 13686087  T
Q  119 tcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 190  Q
    |||| ||||||||||||| |||||| ||| ||||||| || ||||||||||||||||| |||||||||||||    
T  13686088 tcccattgtttattttcatatacccgattgtattgaatctcttattattaatgaaatgctataagcatattt 13686159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 33 - 190
Target Start/End: Complemental strand, 37061195 - 37061038
Alignment:
Q  33 tttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttatt 132  Q
    |||||||||| |||||||||||||| ||||  |||| |||| | |||||||||||| |||||| ||||| ||| ||| ||||||||||||||||||||||    
T  37061195 tttaccaactctagggtggagtttgctaggtgacaaacaaatgtggttgctcatgtgcttgcaagagaagccatgtttctagctagtcccgttgtttatt 37061096  T
Q  133 ttcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 190  Q
    || |||||||| ||| ||||||| || |||||||||| ||||||||||||||||||||    
T  37061095 ttaacatacccgattgtattgaatctcttattattaacgaaatgttataagcatattt 37061038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 39 - 186
Target Start/End: Complemental strand, 30191087 - 30190940
Alignment:
Q  39 aactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcaca 138  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||| |||| || ||||  ||||||   ||||||||||||  ||||||||| | |    
T  30191087 aactttagggtggagtttgttaggcaacaagccaacgtggttgctcatgctcttacaagagagaccacgtctttagctagtcccgccgtttattttgata 30190988  T
Q  139 tacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    || |||||| ||||||| || |||||||||||||||||||||||||||    
T  30190987 tatccaattgtattgaaactcttattattaatgaaatgttataagcat 30190940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 39 - 186
Target Start/End: Complemental strand, 16431495 - 16431348
Alignment:
Q  39 aactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcaca 138  Q
    |||| |||||||||||||||||||| |||| | |||||||||| ||||| ||||||| ||||| |||||||||||| || ||||| |||||||||| | |    
T  16431495 aactctagggtggagtttgttaggcgacaaaccaacgaggttgttcatgctcttgcaagagaagccacgttactagttactcccgctgtttattttgaaa 16431396  T
Q  139 tacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    ||| || || |||||||  | |||||||||||||||||||||||||||    
T  16431395 tactcagttgtattgaaattcttattattaatgaaatgttataagcat 16431348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 37 - 182
Target Start/End: Complemental strand, 16582480 - 16582335
Alignment:
Q  37 ccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttca 136  Q
    ||||||||||||||||||||||  ||| |||||| ||||||| |||||||| ||||||| |||||  |||||||||||||||||||   ||||||||| |    
T  16582480 ccaactttagggtggagtttgtcgggcgacaagccaacgaggctgctcatgctcttgcaagagaagtcacgttactagctagtcccaccgtttattttga 16582381  T
Q  137 catacccaattatattgaacctattattattaatgaaatgttataa 182  Q
     ||||||| || ||||||| |||||||||||||||| ||| |||||    
T  16582380 aatacccagttgtattgaaactattattattaatgatatgctataa 16582335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 30859343 - 30859510
Alignment:
Q  19 tgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctag 118  Q
    |||| ||| |||||||| | |||| |||||||||||||||||||| |||||| |||| ||||||||||| ||||||| | ||  ||||||   || ||||    
T  30859343 tgttcagtactttcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttaactag 30859442  T
Q  119 tcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    |||||  ||||||||| | |||||||||| ||||||| || ||||||| ||||||||| |||||||||    
T  30859443 tcccgccgtttattttaatatacccaattgtattgaaactcttattataaatgaaatgctataagcat 30859510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 55227592 - 55227759
Alignment:
Q  19 tgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctag 118  Q
    |||| ||| |||||||| | |||| |||||||||||||||||||| |||| | |||| ||||||||||| ||||||| | ||  |||| |   |||||||    
T  55227592 tgttcagtactttcttttctaactctagggtggagtttgttaggcgacaaaccaacgtggttgctcatgctcttgcaagggaggccacatctttagctag 55227691  T
Q  119 tcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    |||||  ||||||||| | |||||||||| ||||||| || ||||||| ||||||||| |||||||||    
T  55227692 tcccgccgtttattttaatatacccaattgtattgaaactcttattataaatgaaatgctataagcat 55227759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 190
Target Start/End: Complemental strand, 54027848 - 54027691
Alignment:
Q  33 tttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttatt 132  Q
    |||||||||| ||||||||||||| |||||| |||||| || | ||| |||||   ||||| ||| ||| |||| || || |||| ||||| | ||||||    
T  54027848 tttaccaactctagggtggagttttttaggcgacaagctaatgtggtggctcacactcttgtaggggaagccacatttctcgctactcccgctatttatt 54027749  T
Q  133 ttcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 190  Q
    |||| |||||||||||||||||| || | ||||||||||||||| |||||||| ||||    
T  54027748 ttcatatacccaattatattgaaactttgattattaatgaaatgatataagcacattt 54027691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 39 - 185
Target Start/End: Original strand, 18878174 - 18878320
Alignment:
Q  39 aactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcaca 138  Q
    |||| |||||||||||||||||||| |||||  || |  |||||||||| | ||||| ||||  |||||||  |||||| || ||| ||||||| | | |    
T  18878174 aactctagggtggagtttgttaggcgacaagtcaatgcagttgctcatgcttttgcacgagaggccacgtttttagctaatctcgtcgtttattatgata 18878273  T
Q  139 tacccaattatattgaacctattattattaatgaaatgttataagca 185  Q
    |||||| || ||||||| |||||||||||||||||||| ||||||||    
T  18878274 tacccacttgtattgaaactattattattaatgaaatgctataagca 18878320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 39 - 183
Target Start/End: Complemental strand, 20527919 - 20527775
Alignment:
Q  39 aactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcaca 138  Q
    |||| ||||||||||||||||||||  ||||| |||| ||||||||||| ||||||| ||||  ||  |||||| ||||||||||   |||||| | | |    
T  20527919 aactctagggtggagtttgttaggcggcaagctaacggggttgctcatgctcttgcaagagaggccttgttactcgctagtcccgccatttattatgata 20527820  T
Q  139 tacccaattatattgaacctattattattaatgaaatgttataag 183  Q
    ||||| ||| ||||||| || ||||||| ||||||||| ||||||    
T  20527819 tacccgattgtattgaaactcttattatcaatgaaatgctataag 20527775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 190
Target Start/End: Original strand, 4235313 - 4235464
Alignment:
Q  39 aactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcaca 138  Q
    |||| |||||||||||||||||||| |||||| |||| | | ||||||| ||||||| ||||  ||||||   |||||||| | |  ||||||| | | |    
T  4235313 aactctagggtggagtttgttaggccacaagccaacgcgatggctcatgctcttgcacgagaggccacgtctttagctagttctgccgtttattatgata 4235412  T
Q  139 tacccaattatattgaacctattattattaatgaaatgttataagcatattt 190  Q
    || |||||| ||||||  ||||||| |||||||||||| |||||||||||||    
T  4235413 tatccaattgtattgagactattatgattaatgaaatgctataagcatattt 4235464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 190
Target Start/End: Complemental strand, 27087593 - 27087436
Alignment:
Q  33 tttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttatt 132  Q
    |||||||||| |||||||||||||||||||| |||||| || | ||| | |||   |||||||   ||| |||| || || |||||||||| | | ||||    
T  27087593 tttaccaactctagggtggagtttgttaggcgacaagctaatgtggtgggtcacactcttgcaaaggaagccacatttctcgctagtcccgctatctatt 27087494  T
Q  133 ttcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 190  Q
    |||| |||| ||||| ||||||| || | ||||||||||||||| |||||||| ||||    
T  27087493 ttcatatactcaattgtattgaaactttgattattaatgaaatgctataagcacattt 27087436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 33 - 190
Target Start/End: Complemental strand, 27066492 - 27066335
Alignment:
Q  33 tttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttatt 132  Q
    |||||||||| |||||||||||||||| ||| |||||| || | ||| | |||   |||||||   ||| |||| || || |||||||||| | | ||||    
T  27066492 tttaccaactctagggtggagtttgttgggcgacaagctaatgtggtgggtcacactcttgcaaaggaagccacatttctcgctagtcccgctatctatt 27066393  T
Q  133 ttcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 190  Q
    |||| |||| ||||| ||||||| || | ||||||||||||||| |||||||| ||||    
T  27066392 ttcatatactcaattgtattgaaactttgattattaatgaaatgctataagcacattt 27066335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 185
Target Start/End: Original strand, 12355218 - 12355370
Alignment:
Q  33 tttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttatt 132  Q
    |||||||||| |||||||||||||||||||| |||||  || | ||| |||||   |||| ||   ||| |||| || || |||||||||  | | ||||    
T  12355218 tttaccaactctagggtggagtttgttaggcgacaaggtaatgtggtggctcacactcttccaaaggaaaccacatttctcgctagtcccactatctatt 12355317  T
Q  133 ttcacatacccaattatattgaacctattattattaatgaaatgttataagca 185  Q
    |||| |||||||||| ||||||| || | ||||||||||||||| | ||||||    
T  12355318 ttcatatacccaattgtattgaaactttgattattaatgaaatgctttaagca 12355370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 37 - 185
Target Start/End: Original strand, 34301807 - 34301955
Alignment:
Q  37 ccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttca 136  Q
    |||||| | |||||||||| ||||||| |||| |||| | ||| ||||||  |||||||  |||  |||| ||| ||||||||||||||  ||||| |      
T  34301807 ccaactctcgggtggagttcgttaggcgacaaacaaatgcggtagctcataatcttgcaaaagaggccacattaatagctagtcccgttacttattatgc 34301906  T
Q  137 catacccaattatattgaacctattattattaatgaaatgttataagca 185  Q
     |||||||||| ||||||| || | || |||||||||||| ||||||||    
T  34301907 tatacccaattgtattgaatctttaatcattaatgaaatgctataagca 34301955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 54823658 - 54823806
Alignment:
Q  28 ctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgt 127  Q
    |||||||| | |||| ||||||| ||||||||| || | |||| ||||  |||| ||||| |||| || ||||   |||||   ||||||||||||  ||    
T  54823658 ctttcttttctaactctagggtgaagtttgttaagcgataagccaacgtagttgttcatgctcttacaagagaggtcacgtctttagctagtcccgccgt 54823757  T
Q  128 ttattttcacatacccaattatattgaacctattattattaatgaaatg 176  Q
    ||||||| | |||||||||| |||||||  | |||||||||||||||||    
T  54823758 ttattttgatatacccaattgtattgaaatttttattattaatgaaatg 54823806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 190
Target Start/End: Original strand, 4462610 - 4462723
Alignment:
Q  76 aggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaat 175  Q
    |||||||||||||| | ||||||||| |||| |||||| ||||||||    |||||||||| ||| |  | | ||||||| || ||||||||||| ||||    
T  4462610 aggttgctcatgtt-tcgcaggagaagccacattactaactagtcccacaatttattttcatatatctgaatgtattgaaacttttattattaataaaat 4462708  T
Q  176 gttataagcatattt 190  Q
    ||||||| |||||||    
T  4462709 gttataaacatattt 4462723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 27066686 - 27066649
Alignment:
Q  33 tttaccaactttagggtggagtttgttaggcaacaagc 70  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  27066686 tttaccaactctagggtggagtttgttaggcgacaagc 27066649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 27066880 - 27066843
Alignment:
Q  33 tttaccaactttagggtggagtttgttaggcaacaagc 70  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  27066880 tttaccaactctagggtggagtttgttaggcgacaagc 27066843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 11790857 - 11790897
Alignment:
Q  146 ttatattgaacctattattattaatgaaatgttataagcat 186  Q
    |||||||||||  ||||||||||||||||||| ||||||||    
T  11790857 ttatattgaacagattattattaatgaaatgtaataagcat 11790897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 23509008 - 23508839
Alignment:
Q  21 tttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtc 120  Q
    |||||||||||||||||||| | |||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||| |||| |||| ||||||||    
T  23509008 tttagttctttctttaccaattctagggtggagtttgttaggcgacaagcaaatggggttgctcatgttcttgcaggagaagccacattacgagctagtc 23508909  T
Q  121 ccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 190  Q
    |||||||||| |||||||||||  ||| |||||||||| |||||||||||||||||  ||||||||||||    
T  23508908 ccgttgtttaatttcacatacctgattgtattgaacctcttattattaatgaaatgcaataagcatattt 23508839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 26 - 179
Target Start/End: Original strand, 16416588 - 16416741
Alignment:
Q  26 ttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgtt 125  Q
    ||||||||||||||||| ||||||| |||||||||||| ||||| ||| |||||||||| | |||||||||||||   ||| ||||||||||||| | ||    
T  16416588 ttctttctttaccaactctagggtgtagtttgttaggcgacaagtaaatgaggttgctcgtattcttgcaggagatgtcacattactagctagtctcatt 16416687  T
Q  126 gtttattttcacatacccaattatattgaacctattattattaatgaaatgtta 179  Q
     |||||||||| |||||||||| |||||||||| ||||||||||||||||||||    
T  16416688 atttattttcatatacccaattgtattgaacctcttattattaatgaaatgtta 16416741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 39 - 186
Target Start/End: Complemental strand, 34355884 - 34355737
Alignment:
Q  39 aactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcaca 138  Q
    |||| ||||||| ||||||||| || | |||| |||||||||||||||| ||||||| ||||| ||| ||||||||||||||||| |||||||||| | |    
T  34355884 aactctagggtgaagtttgttatgcgaaaagccaacgaggttgctcatgctcttgcaagagaaaccatgttactagctagtcccgctgtttattttgata 34355785  T
Q  139 tacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    ||||||||| ||||||| || ||||||| ||||||||| |||||||||    
T  34355784 tacccaattgtattgaaactcttattatcaatgaaatgctataagcat 34355737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 39 - 186
Target Start/End: Complemental strand, 1493382 - 1493235
Alignment:
Q  39 aactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcaca 138  Q
    |||| |||||||||||||||||||| |||||| |||| ||||||||||| ||||||| ||||  ||||||   ||||||||||||  ||||||||  | |    
T  1493382 aactctagggtggagtttgttaggcgacaagccaacgcggttgctcatgctcttgcaagagaggccacgtctttagctagtcccgccgtttatttcgata 1493283  T
Q  139 tacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    ||||||||||||||||| |||||||||| ||||||||| |||||||||    
T  1493282 tacccaattatattgaaactattattatcaatgaaatgctataagcat 1493235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 39 - 190
Target Start/End: Original strand, 9959227 - 9959378
Alignment:
Q  39 aactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcaca 138  Q
    |||| |||||||||||||||||||| |||||| |||| ||||||||||| ||||||| |||||| |||||   ||||||||||||  ||||||| | | |    
T  9959227 aactctagggtggagtttgttaggcgacaagccaacgcggttgctcatgctcttgcacgagaactcacgtctttagctagtcccgccgtttattatgata 9959326  T
Q  139 tacccaattatattgaacctattattattaatgaaatgttataagcatattt 190  Q
    ||||||||| ||||||  ||||||| |||||||||||| |||||||| ||||    
T  9959327 tacccaattgtattgagactattatgattaatgaaatgctataagcacattt 9959378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 176
Target Start/End: Original strand, 187079 - 187172
Alignment:
Q  83 tcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatg 176  Q
    ||||||||||||||||||| |||| || ||||||||||  ||| |||||||| ||||| |||||| ||||||| || |||||||||||||||||    
T  187079 tcatgttcttgcaggagaagccacatttctagctagtcttgttatttattttaacatatccaattgtattgaatctcttattattaatgaaatg 187172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 186
Target Start/End: Original strand, 31029126 - 31029275
Alignment:
Q  37 ccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttca 136  Q
    |||||| |||||||||||||||||||| |||||| |||  ||| ||||||  ||||||| ||||  ||||||   |||||||||||| ||| |||| | |    
T  31029126 ccaactctagggtggagtttgttaggcgacaagctaacacggtggctcatactcttgcacgagaggccacgtccttagctagtcccgctgtctattatga 31029225  T
Q  137 catacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
     |||||||||| ||||||  ||||||| || ||||||||| |||||||||    
T  31029226 tatacccaattgtattgagactattatgatcaatgaaatgctataagcat 31029275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 33 - 185
Target Start/End: Complemental strand, 30141084 - 30140932
Alignment:
Q  33 tttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttatt 132  Q
    |||||||||| |||||||||||||||||||| |||||| || | ||| | |||   |||||||   ||| |||| || || |||||||||| | | ||||    
T  30141084 tttaccaactctagggtggagtttgttaggcgacaagctaatgtggtggatcacactcttgcaaaggaagccacatttctcgctagtcccgctatctatt 30140985  T
Q  133 ttcacatacccaattatattgaacctattattattaatgaaatgttataagca 185  Q
    |||| |||||||||| ||||||| || | ||||||||||||||| ||||||||    
T  30140984 ttcatatacccaattgtattgaaactttgattattaatgaaatgctataagca 30140932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 69 - 190
Target Start/End: Original strand, 13768183 - 13768304
Alignment:
Q  69 gcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattatta 168  Q
    ||||||| |||||  ||| |||||||| |||||  ||||||||||| ||||   |||||||||||| | |||||| ||| ||||||| || |||||||||    
T  13768183 gcaaacggggttgtccatattcttgcaagagaagtcacgttactagttagttttgttgtttatttttatatacccgattgtattgaatctcttattatta 13768282  T
Q  169 atgaaatgttataagcatattt 190  Q
    || ||||| |||||||||||||    
T  13768283 atcaaatgctataagcatattt 13768304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 13825454 - 13825534
Alignment:
Q  21 tttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaa 101  Q
    |||| |||||||||| | |||||||| |||||||||||||||| |||||| |||| |||||||||||| |||||| |||||    
T  13825454 tttacttctttcttttctaactttagtgtggagtttgttaggcgacaagccaacgcggttgctcatgtacttgcaagagaa 13825534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 10910512 - 10910623
Alignment:
Q  21 tttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtc 120  Q
    |||||| |||||||| | ||||||||||||||||||||||||  |||| | |||  ||||||||||| ||||||| ||||| |||||||  ||| |||||    
T  10910512 tttagtcctttcttttctaactttagggtggagtttgttaggtgacaaactaacacggttgctcatgctcttgcaagagaaaccacgttcttagttagtc 10910611  T
Q  121 ccgttgtttatt 132  Q
    ||| | ||||||    
T  10910612 ccgctatttatt 10910623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 39 - 186
Target Start/End: Original strand, 16890210 - 16890357
Alignment:
Q  39 aactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcaca 138  Q
    |||| |||||||||||||||||||| ||||   |||| ||||||||||| ||||||| ||||| |||| |   || ||||| |||  ||||||||| | |    
T  16890210 aactctagggtggagtttgttaggcgacaaagcaacgcggttgctcatgctcttgcaagagaagccacatctttaactagtaccgccgtttattttgata 16890309  T
Q  139 tacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    ||||||||| | ||||| || || ||||||||||||||  ||||||||    
T  16890310 tacccaattgttttgaaactcttgttattaatgaaatgcaataagcat 16890357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 35087882 - 35087841
Alignment:
Q  144 aattatattgaacctattattattaatgaaatgttataagca 185  Q
    |||| ||||||| | |||||||||||||||||||||||||||    
T  35087882 aattgtattgaaacgattattattaatgaaatgttataagca 35087841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 6695689 - 6695725
Alignment:
Q  149 tattgaacctattattattaatgaaatgttataagca 185  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  6695689 tattgaaactattatcattaatgaaatgttataagca 6695725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 9e-55; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 33611194 - 33611022
Alignment:
Q  18 ctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagcta 117  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||  ||||| ||||||||||||||||||  ||| ||||||||||     
T  33611194 ctgttcagttctttctttaccaactctagggtggagtttgttaggcgacaagcaaacagggttgttcatgttcttgcaggagatgccatgttactagctg 33611095  T
Q  118 gtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 190  Q
    ||||||||||||||||||| |||||| ||| |||||||||| ||||||||||| ||||| |||||||||||||    
T  33611094 gtcccgttgtttattttcatatacccgattgtattgaacctcttattattaataaaatgctataagcatattt 33611022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 28 - 186
Target Start/End: Complemental strand, 13015114 - 13014956
Alignment:
Q  28 ctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgt 127  Q
    |||| ||| |||||| | ||||| |||||||||||| |||||| |||||||||||||||| ||||||| ||||| ||||||||||||||||||| |||||    
T  13015114 ctttattttccaactctcgggtgtagtttgttaggcgacaagccaacgaggttgctcatgctcttgcaagagaatccacgttactagctagtcctgttgt 13015015  T
Q  128 ttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    ||||||| | |||||||||| ||||||| |||||||||| ||||||||| |||||||||    
T  13015014 ttattttgagatacccaattgtattgaaactattattatcaatgaaatgctataagcat 13014956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 28 - 186
Target Start/End: Original strand, 15633218 - 15633376
Alignment:
Q  28 ctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgt 127  Q
    |||| ||| |||||| | |||||||||||||||||| |||||| || ||||||||||||  ||||||| ||||| |||||||||||||||||||||||||    
T  15633218 ctttattttccaactctcgggtggagtttgttaggcgacaagccaatgaggttgctcatactcttgcaagagaagccacgttactagctagtcccgttgt 15633317  T
Q  128 ttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    ||| ||| | |||||||||| ||||||| |||||||||| ||||||||| |||||||||    
T  15633318 ttactttgaaatacccaattgtattgaaactattattatcaatgaaatgctataagcat 15633376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 27 - 190
Target Start/End: Complemental strand, 48100892 - 48100729
Alignment:
Q  27 tctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttg 126  Q
    ||||| |||||||||| |||||||||||||| ||||| ||||||||| | |||||||||||| |||||||||||| ||||||| |||| |||||||||||    
T  48100892 tctttttttaccaactctagggtggagtttgctaggcgacaagcaaatgtggttgctcatgtgcttgcaggagaatccacgtttctagttagtcccgttg 48100793  T
Q  127 tttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 190  Q
    ||||||||   ||| |  ||| |||||||  | ||||||||||||||||| |||||||||||||    
T  48100792 tttattttagtatatctgattgtattgaatatcttattattaatgaaatgctataagcatattt 48100729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 22 - 190
Target Start/End: Original strand, 48770095 - 48770263
Alignment:
Q  22 ttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcc 121  Q
    |||| ||||| |||||||||| ||||||||||||| || ||| | |||| || ||||||||||||||||| ||||||||| |||| |||| |||||||||    
T  48770095 ttagctctttttttaccaactctagggtggagtttattcggcgagaagctaatgaggttgctcatgttctcgcaggagaagccacattacaagctagtcc 48770194  T
Q  122 cgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 190  Q
    |    |||||||||| |||||| | | ||||||| || ||||||||||||||||| |||||||||||||    
T  48770195 caccatttattttcatatacccgaatgtattgaaactcttattattaatgaaatgctataagcatattt 48770263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 32480195 - 32480362
Alignment:
Q  19 tgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctag 118  Q
    |||| ||| |||||||| | |||| |||||||||||||||||||| |||||| |||| ||||||||||  ||||||| | ||  ||||||   |||||||    
T  32480195 tgttcagtactttcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgctcatactcttgcaagggaggccacgtctttagctag 32480294  T
Q  119 tcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    |||||  ||||||||| | |||| ||||| ||||||| || ||||||||||||||||| |||||||||    
T  32480295 tcccgcagtttattttaatatactcaattgtattgaaactcttattattaatgaaatgctataagcat 32480362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 186
Target Start/End: Original strand, 3896475 - 3896612
Alignment:
Q  49 tggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaatta 148  Q
    ||||||||||||||| |||||| |||| |||||||||||  |||||| ||||  ||||||   ||||||||||||  ||||||||| | |||||| |||     
T  3896475 tggagtttgttaggcgacaagccaacgtggttgctcatgcacttgcaagagaggccacgtctttagctagtcccgccgtttattttgatatacccgattg 3896574  T
Q  149 tattgaacctattattattaatgaaatgttataagcat 186  Q
    ||||||| || ||||||||||||||||| |||||||||    
T  3896575 tattgaaactcttattattaatgaaatgctataagcat 3896612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 186
Target Start/End: Complemental strand, 47081794 - 47081645
Alignment:
Q  37 ccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttca 136  Q
    |||||| |||||||||||||||||||| |||||| |||| ||| ||||||| ||||||| ||||  ||||||   |||||||||||| ||| |||| | |    
T  47081794 ccaactctagggtggagtttgttaggcgacaagctaacgcggtggctcatgctcttgcacgagaggccacgtctttagctagtcccgctgtctattatga 47081695  T
Q  137 catacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
     |||||||||| ||||||  ||||||| || ||||||||| |||||||||    
T  47081694 tatacccaattgtattgagactattatgatcaatgaaatgctataagcat 47081645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 38 - 186
Target Start/End: Complemental strand, 8118940 - 8118792
Alignment:
Q  38 caactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcac 137  Q
    ||||| |||||||||||||||||||| |||||| |||| ||| ||||||| ||||||| ||||  ||||||   |||||||||||| ||| |||| | |     
T  8118940 caactctagggtggagtttgttaggcgacaagctaacgcggtggctcatgctcttgcacgagaggccacgtctttagctagtcccgctgtctattatgat 8118841  T
Q  138 atacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    |||||||||| ||||||  ||||||| || ||||||||| |||||||||    
T  8118840 atacccaattgtattgagactattatgatcaatgaaatgctataagcat 8118792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 44 - 183
Target Start/End: Complemental strand, 24226342 - 24226203
Alignment:
Q  44 tagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacataccc 143  Q
    |||||||||||||||||||| |||||| |||| ||||||||||| ||||||| ||||  ||||||   ||||||||||||  ||||||| | | ||||||    
T  24226342 tagggtggagtttgttaggcgacaagccaacgcggttgctcatgctcttgcacgagaggccacgtctttagctagtcccgacgtttattatgatataccc 24226243  T
Q  144 aattatattgaacctattattattaatgaaatgttataag 183  Q
    | || |||| || || ||||||||||||||||| ||||||    
T  24226242 acttgtatttaaactcttattattaatgaaatgctataag 24226203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 49 - 190
Target Start/End: Original strand, 11343102 - 11343243
Alignment:
Q  49 tggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaatta 148  Q
    ||||||||||||||| ||||  |||||  ||||||||||  |||||| ||| | ||||||| || |||||||||| |||||||||||| |||||| | ||    
T  11343102 tggagtttgttaggcgacaaataaacggagttgctcatgcccttgcaagagtagccacgttgctcgctagtcccgctgtttattttcatataccctaata 11343201  T
Q  149 tattgaacctattattattaatgaaatgttataagcatattt 190  Q
    ||||||| |  ||||||| ||||||||| ||||| |||||||    
T  11343202 tattgaaacacttattatcaatgaaatgctataaacatattt 11343243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 29 - 186
Target Start/End: Original strand, 30502496 - 30502653
Alignment:
Q  29 tttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtt 128  Q
    ||||||| | |||| || ||||||||||||||  | |||||  |||| ||||||||||  ||||||| ||||  ||||||   ||||||||||||  |||    
T  30502496 tttcttttctaactctaaggtggagtttgttactcgacaagtcaacgcggttgctcatactcttgcaagagaggccacgtccttagctagtcccgcagtt 30502595  T
Q  129 tattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    |||||| | |||||| ||| ||||||| || |||||||||||||||||||||||||||    
T  30502596 tattttgatatacccgattgtattgaaactcttattattaatgaaatgttataagcat 30502653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 186
Target Start/End: Complemental strand, 17238831 - 17238666
Alignment:
Q  21 tttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtc 120  Q
    ||||||||||||||| | |||| |||||||||||||||||||| |||||| |||| |||||||||||  |||||| ||||| |||| ||  || ||||||    
T  17238831 tttagttctttcttttctaactctagggtggagtttgttaggcgacaagccaacgcggttgctcatgcacttgcaagagaagccacattcttaactagtc 17238732  T
Q  121 ccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    ||  | |||||| | | |||||| | | ||||||| |  | ||||| ||||||||| |||||||||    
T  17238731 ccactatttattatgatatacccgaatgtattgaatccttaattatcaatgaaatgctataagcat 17238666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 39 - 185
Target Start/End: Original strand, 41601433 - 41601579
Alignment:
Q  39 aactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcaca 138  Q
    |||| ||||||||||||||||||||  ||||| || | ||||| ||||| ||||||| ||||  |||| |   |||||||||||| |||||||| | | |    
T  41601433 aactctagggtggagtttgttaggcggcaagccaaagcggttgttcatgctcttgcacgagaggccacatctttagctagtcccgctgtttattatgata 41601532  T
Q  139 tacccaattatattgaacctattattattaatgaaatgttataagca 185  Q
    ||||||||| ||||||| ||||||| || | ||||||| ||||||||    
T  41601533 tacccaattgtattgaaactattatgatgagtgaaatgctataagca 41601579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 3205281 - 3205177
Alignment:
Q  29 tttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtt 128  Q
    ||||||| | ||||||| ||||||||||||||||| |||| | |||| ||||||||||| ||||||| ||||| ||||||   ||||||||||||  |||    
T  3205281 tttcttttctaactttatggtggagtttgttaggcgacaacccaacgtggttgctcatgctcttgcaagagaagccacgtctttagctagtcccgccgtt 3205182  T
Q  129 tattt 133  Q
    |||||    
T  3205181 tattt 3205177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 39 - 186
Target Start/End: Original strand, 27458138 - 27458285
Alignment:
Q  39 aactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcaca 138  Q
    |||| ||||||||||||| |||||  |||||| |||||||||||| | | ||||||  ||||  ||||||   |||||||  |||| ||||||| | |||    
T  27458138 aactctagggtggagtttattaggagacaagccaacgaggttgctaacgctcttgctagagatgccacgtccttagctagctccgtagtttattatgaca 27458237  T
Q  139 tacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    ||||||||| ||||||| | ||||||||||||||| || | |||||||    
T  27458238 tacccaattgtattgaatccattattattaatgaattgctttaagcat 27458285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 77 - 190
Target Start/End: Original strand, 27810574 - 27810687
Alignment:
Q  77 ggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatg 176  Q
    |||||||||||  |||||||| ||  |||| || || ||||||| || |||||||||| | ||||||| || ||||||| |||||||||| ||||||||     
T  27810574 ggttgctcatgcacttgcaggggaggccacattccttgctagtctcgctgtttattttaatatacccagttgtattgaaactattattataaatgaaatt 27810673  T
Q  177 ttataagcatattt 190  Q
     |||||||||||||    
T  27810674 ctataagcatattt 27810687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 26016618 - 26016679
Alignment:
Q  129 tattttcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 190  Q
    |||||| | |||||||||| |||||||  | ||||||||||||||||| |||||||||||||    
T  26016618 tattttgatatacccaattgtattgaatatcttattattaatgaaatgctataagcatattt 26016679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 182
Target Start/End: Complemental strand, 3960198 - 3960065
Alignment:
Q  49 tggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaatta 148  Q
    ||||||| ||||||| ||||||||| | ||| ||||||  ||||||| ||||  |||| ||| |||||| | |||||  ||||| |   |||| |||||     
T  3960198 tggagttcgttaggctacaagcaaatgtggtagctcataatcttgcaagagagaccacattattagctaattccgttacttattatgttatactcaattg 3960099  T
Q  149 tattgaacctattattattaatgaaatgttataa 182  Q
    ||||||| || | || ||||||||||||||||||    
T  3960098 tattgaatctttaataattaatgaaatgttataa 3960065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 29961970 - 29962007
Alignment:
Q  149 tattgaacctattattattaatgaaatgttataagcat 186  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  29961970 tattgaatctattattattaatgaaatgctataagcat 29962007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 190
Target Start/End: Complemental strand, 42510067 - 42510026
Alignment:
Q  149 tattgaacctattattattaatgaaatgttataagcatattt 190  Q
    ||||||| ||||||| ||||||||||||||||||||| ||||    
T  42510067 tattgaaactattatcattaatgaaatgttataagcacattt 42510026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 5e-44; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 28 - 186
Target Start/End: Complemental strand, 2157928 - 2157770
Alignment:
Q  28 ctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgt 127  Q
    |||| ||| |||||| | |||||||||||||||||| |||||| |||||| ||||| ||| ||||||| ||||| |||||||||||||||||||||||||    
T  2157928 ctttattttccaactctcgggtggagtttgttaggcgacaagccaacgagattgcttatgctcttgcaagagaagccacgttactagctagtcccgttgt 2157829  T
Q  128 ttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    ||||||| | |||||||||| ||||||| |||||||||| ||||||||| |||||||||    
T  2157828 ttattttgagatacccaattgtattgaaactattattatcaatgaaatgctataagcat 2157770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 25 - 190
Target Start/End: Original strand, 19237652 - 19237811
Alignment:
Q  25 gttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgt 124  Q
    |||||||||||||||||| ||||||||||||| |||||| ||||||||| ||||||||||||||||||||| ||||   |||| ||||||||| | ||      
T  19237652 gttctttctttaccaactctagggtggagtttattaggcgacaagcaaatgaggttgctcatgttcttgcaagagaggtcacgctactagctaattccac 19237751  T
Q  125 tgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 190  Q
    |||||||||||| ||| || |      ||||||| |||||||||||||||||||||||||||||||    
T  19237752 tgtttattttcatatatccga------tgaacctcttattattaatgaaatgttataagcatattt 19237811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 78 - 190
Target Start/End: Original strand, 23622542 - 23622654
Alignment:
Q  78 gttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgt 177  Q
    ||||||||||| |||||||||||| ||||||| |||||||||| ||||||||||||| |||||||| ||| ||||||| || |||||||||||||||||     
T  23622542 gttgctcatgtgcttgcaggagaagccacgtttctagctagtctcgttgtttattttaacatacccgattgtattgaatctcttattattaatgaaatgc 23622641  T
Q  178 tataagcatattt 190  Q
    |||||||||||||    
T  23622642 tataagcatattt 23622654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 22 - 190
Target Start/End: Original strand, 36044900 - 36045068
Alignment:
Q  22 ttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcc 121  Q
    |||||| ||| |||||||||| ||| ||| |||||||||||| |||||| || |||||||||||| |||||| ||||||| |||| ||||||||||||||    
T  36044900 ttagttatttttttaccaactctagagtgaagtttgttaggcgacaagccaatgaggttgctcatattcttgtaggagaagccacattactagctagtcc 36044999  T
Q  122 cgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 190  Q
    |    |||||||||| || ||| | | ||||||| || ||||||||||||||||| |||||||||||||    
T  36045000 caccatttattttcatatgcccgaatgtattgaatctcttattattaatgaaatgctataagcatattt 36045068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 22292359 - 22292526
Alignment:
Q  19 tgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctag 118  Q
    |||| ||| |||||||| | |||| |||||||||||||||||||| |||||| |||| ||||||||||| ||||||| | ||  ||||||   |||||||    
T  22292359 tgttcagtactttcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttagctag 22292458  T
Q  119 tcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    |||||  ||||||||| | |||||||||| ||||||| || ||||||| ||||||||| |||||||||    
T  22292459 tcccgccgtttattttaatatacccaattgtattgaaactcttattataaatgaaatgctataagcat 22292526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 19741690 - 19741524
Alignment:
Q  19 tgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctag 118  Q
    |||||| |||||| ||| |||||| ||||||| | |||||||||| |||||| |||| ||||||||||| ||||||| ||||| |||| |||||||||||    
T  19741690 tgtttacttctttattttccaactctagggtgaaatttgttaggcgacaagctaacggggttgctcatgctcttgcaagagaagccacattactagctag 19741591  T
Q  119 tcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagca 185  Q
    ||||| |||||||  | | ||||  | || ||||||| || ||||||| ||||||||||||||||||    
T  19741590 tcccgctgtttatcatgaaatacatatttgtattgaaactcttattatcaatgaaatgttataagca 19741524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 49 - 190
Target Start/End: Complemental strand, 29955594 - 29955453
Alignment:
Q  49 tggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaatta 148  Q
    ||||||||| ||||| |||| ||||   |||||||||||| |||| | |||||  |||||| ||| |||||| | ||||||||||| |||||||  |||     
T  29955594 tggagtttgctaggcgacaaacaaatatggttgctcatgtgcttgtaagagaagtcacgtttctaactagtctcattgtttattttaacatacctgattg 29955495  T
Q  149 tattgaacctattattattaatgaaatgttataagcatattt 190  Q
    ||||||| || ||||||||||||||||||||||| |||||||    
T  29955494 tattgaatcttttattattaatgaaatgttataatcatattt 29955453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 185
Target Start/End: Complemental strand, 29755099 - 29754948
Alignment:
Q  33 tttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttatt 132  Q
    |||||||||| |||||||||||||||||||| |||||| || | ||| |||||   |||||||  |||| |||| || || |||||||||| | | ||||    
T  29755099 tttaccaactctagggtggagtttgttaggcgacaagctaatgtggtggctcacactcttgcaa-agaagccacatttctcgctagtcccgctatctatt 29755001  T
Q  133 ttcacatacccaattatattgaacctattattattaatgaaatgttataagca 185  Q
    |||| |||||||||| ||||||| || | ||||||||||||||| ||||||||    
T  29755000 ttcatatacccaattgtattgaaactttgattattaatgaaatgctataagca 29754948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 28 - 186
Target Start/End: Original strand, 18759705 - 18759862
Alignment:
Q  28 ctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgt 127  Q
    |||||||| | |||| |||||||||||||||||||  | |||| ||||  ||| |||||| ||||||| ||||  |||| |   ||| ||||||||  ||    
T  18759705 ctttcttttctaactctagggtggagtttgttaggtgataagccaacgcagtt-ctcatgctcttgcaagagagaccacatctttagttagtcccgccgt 18759803  T
Q  128 ttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    ||||||| | |||||||||||||||||| || ||||||||||||||||| |||||||||    
T  18759804 ttattttgatatacccaattatattgaaacttttattattaatgaaatgctataagcat 18759862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 33 - 182
Target Start/End: Complemental strand, 5335355 - 5335206
Alignment:
Q  33 tttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttatt 132  Q
    |||||||||| ||||||||||||||||||||||||||| || | | | |||||   |||||||   ||| |||| || || ||||||| || | | ||||    
T  5335355 tttaccaactctagggtggagtttgttaggcaacaagctaatgtgttggctcacactcttgcaaaggaagccacatttctcgctagtctcgctatctatt 5335256  T
Q  133 ttcacatacccaattatattgaacctattattattaatgaaatgttataa 182  Q
    |||| | | |||||||||||||| || | ||||||||||||||| |||||    
T  5335255 ttcataaatccaattatattgaaactttgattattaatgaaatgatataa 5335206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 142
Target Start/End: Original strand, 40299909 - 40300005
Alignment:
Q  46 gggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacc 142  Q
    |||||||||||||||||| ||||||||||| ||||||||||  ||| | || |||  |||| || || |||||| |||||||||||||||| |||||    
T  40299909 gggtggagtttgttaggcgacaagcaaacgtggttgctcatactctcgtagaagaggccacatttctcgctagttccgttgtttattttcatatacc 40300005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 183
Target Start/End: Original strand, 28246246 - 28246405
Alignment:
Q  28 ctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgt 127  Q
    |||||||| | |||| |||| ||||||||||||| | |||||  |||| ||||| ||||| ||||||| ||||   |||||   || |||||||||  ||    
T  28246246 ctttcttttctaactctaggatggagtttgttagacgacaagtcaacgtggttgttcatgctcttgcaagagaggtcacgtctttaactagtcccgccgt 28246345  T
Q  128 ttattttcacatacccaattatattgaac----ctattattattaatgaaatgttataag 183  Q
    ||||||| | |||||||||| |||||||     || ||||||||||||||||||||||||    
T  28246346 ttatttttatatacccaattgtattgaatgaaactcttattattaatgaaatgttataag 28246405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 185
Target Start/End: Complemental strand, 13948864 - 13948783
Alignment:
Q  104 cacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagca 185  Q
    |||||| ||||||||| |||||||||||||||| |||||| ||| ||||||| || | ||||||| ||| ||| ||||||||    
T  13948864 cacgtttctagctagttccgttgtttattttcatataccctattgtattgaaactttgattattattgatatgctataagca 13948783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 16088654 - 16088697
Alignment:
Q  142 ccaattatattgaacctattattattaatgaaatgttataagca 185  Q
    |||||||||||||| ||||||| |||||||||||| ||||||||    
T  16088654 ccaattatattgaaactattatgattaatgaaatgctataagca 16088697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 190
Target Start/End: Complemental strand, 16569570 - 16569540
Alignment:
Q  160 ttattattaatgaaatgttataagcatattt 190  Q
    |||||||||||||||||||||||||||||||    
T  16569570 ttattattaatgaaatgttataagcatattt 16569540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 34920069 - 34919988
Alignment:
Q  39 aactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtc 120  Q
    |||| |||||| |||||| | |||| |||||||||||   |||||||||  |||||| ||||  ||||||||||||||||||    
T  34920069 aactctagggtagagtttttcaggcgacaagcaaacggaattgctcatgcacttgcaagagacaccacgttactagctagtc 34919988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 186
Target Start/End: Complemental strand, 7871965 - 7871937
Alignment:
Q  158 tattattattaatgaaatgttataagcat 186  Q
    |||||||||||||||||||||||||||||    
T  7871965 tattattattaatgaaatgttataagcat 7871937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 16088569 - 16088625
Alignment:
Q  39 aactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgca 95  Q
    |||| |||||||||||||||||||| |||||| ||   ||||||||||| |||||||    
T  16088569 aactctagggtggagtttgttaggcgacaagctaatatggttgctcatgctcttgca 16088625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 28 - 186
Target Start/End: Complemental strand, 16739581 - 16739423
Alignment:
Q  28 ctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgt 127  Q
    |||| ||| |||||| | |||||||||||||||||| |||| | |||||| ||||| ||| ||||||| ||||| |||||||||||||||||||||||||    
T  16739581 ctttattttccaactctcgggtggagtttgttaggcgacaaaccaacgagattgctaatgctcttgcaagagaagccacgttactagctagtcccgttgt 16739482  T
Q  128 ttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    ||||||| | |||||||||| ||||||| |||||||||| ||||||||| |||||||||    
T  16739481 ttattttgagatacccaattgtattgaaactattattatcaatgaaatgctataagcat 16739423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 27 - 190
Target Start/End: Original strand, 18357095 - 18357259
Alignment:
Q  27 tctttctttaccaactttagggtggagtttgttaggcaacaagc-aaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgtt 125  Q
    |||||||||||||||| |||||||||||||||||||  | |||| ||||| | ||||||||| ||||||||||||| ||||||||||||||| | |||||    
T  18357095 tctttctttaccaactctagggtggagtttgttaggtgataagccaaacgggattgctcatgctcttgcaggagaagccacgttactagctaattccgtt 18357194  T
Q  126 gtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 190  Q
    ||||||||| | |||||| | ||||||||| || |||||||| |||||||| |||||||||||||    
T  18357195 gtttattttgatatacccgaatatattgaatctcttattattcatgaaatgctataagcatattt 18357259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 49499389 - 49499561
Alignment:
Q  18 ctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagcta 117  Q
    ||||| || ||||| |||||||||| |||||||||||||| ||||| ||||||||| | || |||||||||||||||| ||||| ||||||| |||||||    
T  49499389 ctgttcagctctttttttaccaactctagggtggagtttgctaggcgacaagcaaatgtggctgctcatgttcttgcaagagaagccacgtttctagcta 49499488  T
Q  118 gtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 190  Q
    ||| |||| |||||||| ||||| || ||| ||||||| || ||||||||||||||||| ||||| |||||||    
T  49499489 gtctcgttatttattttaacatatccgattgtattgaatctcttattattaatgaaatgctataaacatattt 49499561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 6006195 - 6006028
Alignment:
Q  19 tgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctag 118  Q
    |||| ||| |||||||| | |||| |||||||||||||||||||| |||||| |||| |||| |||||| ||||||| | ||| ||||||   |||||||    
T  6006195 tgttcagtactttcttttctaactctagggtggagtttgttaggcgacaagccaacgtggtttctcatgctcttgcaagggaagccacgtctttagctag 6006096  T
Q  119 tcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    |||||  ||||||||| | |||||||||| ||||||| || ||||||| ||||||||| |||||||||    
T  6006095 tcccgccgtttattttaatatacccaattgtattgaaactcttattataaatgaaatgctataagcat 6006028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 91 - 189
Target Start/End: Complemental strand, 35907020 - 35906922
Alignment:
Q  91 ttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcatatt 189  Q
    ||||| ||||| ||||||||||||||||||||| |||||||||| | |||||||||| ||||||| |||| ||||| ||||||||| ||||||||||||    
T  35907020 ttgcaagagaagccacgttactagctagtcccgctgtttattttgagatacccaattgtattgaaactatcattatcaatgaaatgctataagcatatt 35906922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 186
Target Start/End: Original strand, 8566012 - 8566161
Alignment:
Q  37 ccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttca 136  Q
    |||||| |||||||||||||||||||| |||||| |||| ||| ||||||| ||||||| ||||  ||||||   |||||||||||| ||| |||| | |    
T  8566012 ccaactctagggtggagtttgttaggcgacaagctaacgcggtggctcatgctcttgcacgagaggccacgtctttagctagtcccgctgtctattatga 8566111  T
Q  137 catacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
     |||||||||| ||||||  ||||||| || ||||||||| |||||||||    
T  8566112 tatacccaattgtattgagactattatgatcaatgaaatgctataagcat 8566161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 195
Target Start/End: Original strand, 36144765 - 36144882
Alignment:
Q  78 gttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgt 177  Q
    |||||||||||||||||| ||||  ||| ||||||| ||||||||  | |||||||||| |||||| ||| |||||||||| || ||||||||||||||     
T  36144765 gttgctcatgttcttgcacgagaggccatgttactaactagtcccactatttattttcatatacccgattgtattgaacctcttgttattaatgaaatgc 36144864  T
Q  178 tataagcatatttgcttt 195  Q
    ||||||||||||| ||||    
T  36144865 tataagcatattttcttt 36144882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 17790132 - 17790299
Alignment:
Q  19 tgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctag 118  Q
    |||| ||| |||||||| | |||| |||||||||||||||||||| |||||| |||| ||||||||| | ||||||| | ||  ||||||   |||||||    
T  17790132 tgttcagtactttcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgctcacgctcttgcaagggaggccacgtctttagctag 17790231  T
Q  119 tcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    ||  |  ||||||||| | |||||||||| ||||||| || ||||||| ||||||||| |||||||||    
T  17790232 tctagccgtttattttaatatacccaattgtattgaaactcttattataaatgaaatgctataagcat 17790299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 19098574 - 19098741
Alignment:
Q  19 tgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctag 118  Q
    |||| ||| |||||||| | |||| |||||||||||||||||||| |||||| |||| ||||||||| | ||||||| | ||  ||||||   |||||||    
T  19098574 tgttcagtactttcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgctcacgctcttgcaagggaggccacgtctttagctag 19098673  T
Q  119 tcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    ||  |  ||||||||| | |||||||||| ||||||| || ||||||| ||||||||| |||||||||    
T  19098674 tctagccgtttattttaatatacccaattgtattgaaactcttattataaatgaaatgctataagcat 19098741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 51 - 185
Target Start/End: Complemental strand, 29373080 - 29372946
Alignment:
Q  51 gagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattata 150  Q
    ||||||||||||| |||| | ||||||||||| |||| |||| || |||||  |||||||||||||||||| |||||||||||| |  ||||| | | ||    
T  29373080 gagtttgttaggcgacaaaccaacgaggttgcccatgctctttcaagagaagtcacgttactagctagtccggttgtttattttaatttacccgaatgta 29372981  T
Q  151 ttgaacctattattattaatgaaatgttataagca 185  Q
    ||||| || ||||||| ||||||||| ||||||||    
T  29372980 ttgaaactcttattatcaatgaaatgctataagca 29372946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 29 - 190
Target Start/End: Original strand, 18342623 - 18342786
Alignment:
Q  29 tttctttaccaa-ctttagggtggagtttgttaggcaacaagc-aaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttg 126  Q
    |||||||||||| || ||||||| |||||||||| | |||||| ||||| | ||||||||| | |||||| |||| | ||||||||||||||| ||||||    
T  18342623 tttctttaccaaactctagggtgaagtttgttagacgacaagccaaacgggattgctcatgctattgcagaagaagctacgttactagctagttccgttg 18342722  T
Q  127 tttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 190  Q
    |||||||| | |||| | | | |||  || || |||||||| |||||||| |||||||||||||    
T  18342723 tttattttaatatactcgaatgtataaaatctcttattattcatgaaatgctataagcatattt 18342786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 28 - 186
Target Start/End: Original strand, 31228227 - 31228385
Alignment:
Q  28 ctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgt 127  Q
    |||||||| | |||| |||||||||||||||||||| |||||| |||| ||||||||||| |||||||   ||  ||||||   |||||| |||||  ||    
T  31228227 ctttcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaatggaggccacgtctttagctaatcccgcagt 31228326  T
Q  128 ttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    ||||||| | |||  ||||| ||||||| || ||||||| ||||||||| |||||||||    
T  31228327 ttattttaatatattcaattgtattgaaactcttattataaatgaaatgctataagcat 31228385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 39 - 185
Target Start/End: Original strand, 31935240 - 31935386
Alignment:
Q  39 aactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcaca 138  Q
    |||| |||||||||||||||||||| |||||| ||||  |||||||||| ||||||| ||||  ||||||   ||||||||||||  ||||||| | | |    
T  31935240 aactctagggtggagtttgttaggcgacaagccaacgcagttgctcatgctcttgcacgagaggccacgtctttagctagtcccgccgtttattatgata 31935339  T
Q  139 tacccaattatattgaacctattattattaatgaaatgttataagca 185  Q
    ||||||||| ||||||| || | || |||||||||||| | ||||||    
T  31935340 tacccaattgtattgaatctttgatgattaatgaaatgctctaagca 31935386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 47 - 185
Target Start/End: Original strand, 31973506 - 31973644
Alignment:
Q  47 ggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaat 146  Q
    ||||||||||||||||| |||||| |||| ||||||||||| ||||||| ||||  ||||||   ||||||||||||  ||||||| | | |||||||||    
T  31973506 ggtggagtttgttaggcgacaagccaacgcggttgctcatgctcttgcacgagaggccacgtctttagctagtcccgccgtttattatgatatacccaat 31973605  T
Q  147 tatattgaacctattattattaatgaaatgttataagca 185  Q
    | ||||||| || | || |||||||||||| | ||||||    
T  31973606 tgtattgaatctttaatgattaatgaaatgctctaagca 31973644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 182
Target Start/End: Original strand, 31809160 - 31809305
Alignment:
Q  37 ccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttca 136  Q
    |||||| |||||||||||||||||||| |||||| |||| ||| ||||||  ||||||| ||||  ||||||   ||||||||||||  ||||||| | |    
T  31809160 ccaactctagggtggagtttgttaggcgacaagccaacgcggtggctcatcctcttgcacgagaggccacgtctttagctagtcccgccgtttattatga 31809259  T
Q  137 catacccaattatattgaacctattattattaatgaaatgttataa 182  Q
     ||| |||||| ||||||  ||||||| |||||||||||| |||||    
T  31809260 tatatccaattgtattgagactattataattaatgaaatgctataa 31809305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 175
Target Start/End: Complemental strand, 31661113 - 31660977
Alignment:
Q  39 aactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcaca 138  Q
    |||| |||||||||||||||||||| |||||| |||| ||||||||||| ||||||| ||||   ||| ||  || |||||||||  ||||||| | | |    
T  31661113 aactctagggtggagtttgttaggcgacaagccaacgcggttgctcatgctcttgcacgagaggtcacttttttatctagtcccgccgtttattatgata 31661014  T
Q  139 tacccaattatattgaacctattattattaatgaaat 175  Q
    ||||||||| ||||||| || | || |||||||||||    
T  31661013 tacccaattgtattgaatctttaatgattaatgaaat 31660977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 186
Target Start/End: Complemental strand, 19603059 - 19602912
Alignment:
Q  39 aactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcaca 138  Q
    |||| |||||||||||||||||||  |||||  |||| ||||||||||  ||||||| ||||| | |||||  |||||||||||    |||||||  | |    
T  19603059 aactctagggtggagtttgttaggtgacaaggcaacgcggttgctcatactcttgcaagagaagcgacgtttttagctagtcccagcatttatttcgata 19602960  T
Q  139 tacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    || || ||| |||| || || ||||||||||||||||| |||||||||    
T  19602959 tatccgattgtatttaatctcttattattaatgaaatgctataagcat 19602912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 186
Target Start/End: Original strand, 53437525 - 53437682
Alignment:
Q  28 ctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgt 127  Q
    |||||||| | |||| |||||||||||||||||||  |||||  || | | ||||||||| ||||||| ||||| |||| |   |||||||||  || ||    
T  53437525 ctttcttttctaactctagggtggagtttgttaggagacaagtcaatgcgattgctcatgctcttgcaagagaagccacatctttagctagtcgtgtagt 53437624  T
Q  128 ttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    ||||||| | || |  | |||||||||| || ||||||||||||||||| |||||||||    
T  53437625 ttattttgatattctga-ttatattgaaactcttattattaatgaaatgctataagcat 53437682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 186
Target Start/End: Original strand, 53394825 - 53394981
Alignment:
Q  29 tttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtt 128  Q
    ||||||| | |||| ||||||||||||| |||||  |||||  || | ||||||||||| ||||||| ||||| ||||||   |||||||||  |  |||    
T  53394825 tttcttttctaactctagggtggagttttttaggagacaagtgaatgcggttgctcatgctcttgcaagagaagccacgtctttagctagtcgtgcagtt 53394924  T
Q  129 tattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    |||||| | || |  | |||||||||| || ||||||||||||||||| |||||||||    
T  53394925 tattttgatattctga-ttatattgaaactcttattattaatgaaatgctataagcat 53394981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 182
Target Start/End: Complemental strand, 38015194 - 38015060
Alignment:
Q  47 ggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaat 146  Q
    ||||||||||||||||| |||||| |||| ||||||| |||  |||||| ||||   |||||||||| |||||| || ||| |||| | | |||| | ||    
T  38015194 ggtggagtttgttaggcgacaagctaacggggttgcttatgcacttgcaagagatgtcacgttactaactagtctcgctgtctattatgatatactc-at 38015096  T
Q  147 tatattgaacctattattattaatgaaatgttataa 182  Q
    | ||||||| || ||||||| ||||||||| |||||    
T  38015095 tgtattgaatctcttattatcaatgaaatgctataa 38015060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 4479903 - 4479866
Alignment:
Q  149 tattgaacctattattattaatgaaatgttataagcat 186  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  4479903 tattgaatctattattattaatgaaatgttataagcat 4479866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 14485654 - 14485691
Alignment:
Q  149 tattgaacctattattattaatgaaatgttataagcat 186  Q
    |||||||||||||||||||||||||||| |||||||||    
T  14485654 tattgaacctattattattaatgaaatgctataagcat 14485691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 16878000 - 16877963
Alignment:
Q  149 tattgaacctattattattaatgaaatgttataagcat 186  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  16878000 tattgaaactattattattaatgaaatgctataagcat 16877963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 182
Target Start/End: Original strand, 45004299 - 45004332
Alignment:
Q  149 tattgaacctattattattaatgaaatgttataa 182  Q
    |||||||||||||||||||||||||||| |||||    
T  45004299 tattgaacctattattattaatgaaatgctataa 45004332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 90 - 186
Target Start/End: Complemental strand, 2025 - 1929
Alignment:
Q  90 cttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    ||||||| ||||  ||||||||||||||||| | ||||||||||| | |||||||| | |||||||||| |||||||||||||||||||||||||||    
T  2025 cttgcagaagaagtcacgttactagctagtctctttgtttattttaatatacccaaatgtattgaacctgttattattaatgaaatgttataagcat 1929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 90 - 186
Target Start/End: Complemental strand, 9681 - 9585
Alignment:
Q  90 cttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    ||||||| ||||  ||||||||||||||||| | ||||||||||| | |||||||| | |||||||||| |||||||||||||||||||||||||||    
T  9681 cttgcagaagaagtcacgttactagctagtctctttgtttattttaatatacccaaatgtattgaacctgttattattaatgaaatgttataagcat 9585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 195
Target Start/End: Original strand, 44461 - 44633
Alignment:
Q  24 agttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcagga-gaacccacgttactagctagtccc 122  Q
    ||||||||||||||||| | |||| || |||||||||||| ||||||| ||| | |  ||||| ||||||||  | |||  ||  |||||||||| |||     
T  44461 agttctttctttaccaattctaggatgtagtttgttaggcgacaagcacacgggatcactcatattcttgcaaaaagaaatcatattactagctaatcct 44560  T
Q  123 gttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcatatttgcttt 195  Q
    |||||||||||| | |||||| ||| |||||||||| ||||||||||||||||  |||||| |||||| ||||    
T  44561 gttgtttattttaatatacccgattgtattgaacctcttattattaatgaaattctataaggatatttccttt 44633  T

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Target: scaffold0040 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 186
Target Start/End: Complemental strand, 62638 - 62481
Alignment:
Q  29 tttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtt 128  Q
    ||||||| | |||| |||||||||||||||||||| |||||| |||| ||||||||||  |||| |  |  |  |||| |   |||||||||||| ||||    
T  62638 tttcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgctcattctctttctaggtaggccacttctttagctagtcccgctgtt 62539  T
Q  129 tattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    |||||| | |||| ||||| ||||||| || ||||||||||||||||| |||||||||    
T  62538 tattttaatatactcaattgtattgaaactcttattattaatgaaatgctataagcat 62481  T

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Target: scaffold0643 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0643
Description:

Target: scaffold0643; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 33 - 185
Target Start/End: Original strand, 1042 - 1194
Alignment:
Q  33 tttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttatt 132  Q
    |||||||||| |||||||||||||||||||| |||| | || | ||| |||||   |||| || | ||| |||| || || |||||||||| | ||||||    
T  1042 tttaccaactctagggtggagtttgttaggcgacaaactaatgtggtggctcacaatcttacaagggaagccacatttctcgctagtcccgctatttatt 1141  T
Q  133 ttcacatacccaattatattgaacctattattattaatgaaatgttataagca 185  Q
    |||| |||||||||| |||||||  | | ||||||||||||||| ||||||||    
T  1142 ttcatatacccaattgtattgaatgtttgattattaatgaaatgctataagca 1194  T

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Target: scaffold0019 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 46 - 182
Target Start/End: Complemental strand, 73471 - 73335
Alignment:
Q  46 gggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaa 145  Q
    |||||||||||| || |  ||||||||| | ||||||| ||   || ||||||||  ||||||| |||||||||||||||||||| ||| | ||||||||    
T  73471 gggtggagtttgctaagagacaagcaaatgtggttgctgatacactcgcaggagagaccacgtttctagctagtcccgttgtttacttttatatacccaa 73372  T
Q  146 ttatattgaacctattattattaatgaaatgttataa 182  Q
    || ||||||| || | ||||||||||| |||||||||    
T  73371 ttgtattgaaactttgattattaatgatatgttataa 73335  T

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Target: scaffold0011 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 191162 - 191051
Alignment:
Q  21 tttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtc 120  Q
    ||||||||||||||| | |||| |||||||||||||||||||| |||||| |||| |||||||||||  |||||| || || |||||||  || ||||||    
T  191162 tttagttctttcttttctaactctagggtggagtttgttaggcgacaagccaacgcggttgctcatgcacttgcaagaaaagccacgttcttaactagtc 191063  T
Q  121 ccgttgtttatt 132  Q
    ||| | ||||||    
T  191062 ccgctatttatt 191051  T

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Target: scaffold0789 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0789
Description:

Target: scaffold0789; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 185
Target Start/End: Complemental strand, 4356 - 4210
Alignment:
Q  39 aactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcaca 138  Q
    |||| |||||||||||||||||||| |||||| || ||||||||||||| | ||||| || |  |||| |   ||||||||||||   |||| | | | |    
T  4356 aactctagggtggagtttgttaggcgacaagccaaagaggttgctcatgctattgcacgaaaggccacatctttagctagtcccgccatttaatatgata 4257  T
Q  139 tacccaattatattgaacctattattattaatgaaatgttataagca 185  Q
    |||||| || ||||||| |||||||||| ||||||||| ||||||||    
T  4256 tacccacttgtattgaaactattattatcaatgaaatgctataagca 4210  T

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Target: scaffold0013 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 143
Target Start/End: Complemental strand, 42576 - 42466
Alignment:
Q  33 tttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttatt 132  Q
    |||| ||||| | |||||||||||| ||||| |||| |||||| ||||| ||||  ||| | ||||||  ||||||| |  |||||||||||||||||||    
T  42576 tttaacaactctcgggtggagtttgctaggcgacaaacaaacgtggttgttcatactctcgtaggagaggccacgtttcacgctagtcccgttgtttatt 42477  T
Q  133 ttcacataccc 143  Q
    || | ||||||    
T  42476 tttatataccc 42466  T

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Target: scaffold0198 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 21874 - 21815
Alignment:
Q  127 tttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 186  Q
    |||||||| | || ||||||| ||||||| || ||||||| |||||||||||||||||||    
T  21874 tttatttttatatccccaattgtattgaatctcttattataaatgaaatgttataagcat 21815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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