View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12681_low_5 (Length: 341)
Name: NF12681_low_5
Description: NF12681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12681_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 33966975 - 33966641
Alignment:
| Q |
1 |
aatacattgtcatacaaaaggaattcgaccgatacgttccgctcgaaacggtttatcaacctacaatacaacaagagcagacttagcagaacaacaattc |
100 |
Q |
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| T |
33966975 |
aatacattgtcatacaaaaggaattcgaccgatacgttctgctcgaaacggtttatcaacctacaatacaacaagagcagacttagcagaacaacaattc |
33966876 |
T |
|
| Q |
101 |
acgaaatgggtgagttttgttggtggtctcaaacacactgtttacaaggctgcaaaaaataagctatttgcttcttatactttgcacgttgataagaatc |
200 |
Q |
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| T |
33966875 |
atgaaatgggtgagttttgttggtggtctcaaacacactgtttacaaggctgcaaaaaataagctatttgcttcttatactttgcacgttgataagaatc |
33966776 |
T |
|
| Q |
201 |
cttcttttggagattttgatacaattcaagatgccattgattctcttccttccatcaatcttgttagagttgtcatcaaggttcatgcaggagtttacac |
300 |
Q |
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| T |
33966775 |
cttcttttggagattttgatacaattcaaaatgccattgattctcttccttccatcaatcttgttagagttgtcatcaaggttcatgcaggagtttacac |
33966676 |
T |
|
| Q |
301 |
gtgagtagtactatactttatctcattttcctttg |
335 |
Q |
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| T |
33966675 |
gtgagtagtactatactttatctcattttcctttg |
33966641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 87 - 307
Target Start/End: Original strand, 43076689 - 43076909
Alignment:
| Q |
87 |
cagaacaacaattcacgaaatgggtgagttttgttggtggtctcaaacacactgtttacaaggctgcaaaaaataagctatttgcttcttatactttgca |
186 |
Q |
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| T |
43076689 |
cagaacaacaattcatgaaatgggtgaaatttgttggtggtctcaaacatactgtctttagaacagccaaaaataagctttttccttcttatactttgaa |
43076788 |
T |
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| Q |
187 |
cgttgataagaatccttcttttgga-gattttgatacaattcaagatgccattgattctcttccttccatcaatcttgttagagttgtcatcaaggttca |
285 |
Q |
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|||| |||| || | | ||| |||||| || ||||||||| ||||||||||| ||||| | ||| ||| | || ||||||||||| |||||||| |
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| T |
43076789 |
cgtttataaacattcaagtaaaggaggattttcat-caattcaagcagccattgattcccttcccttcattaatttagtgagagttgtcattaaggttca |
43076887 |
T |
|
| Q |
286 |
tgcaggagtttacacgtgagta |
307 |
Q |
| |
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|||||| |||||||||| |||| |
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| T |
43076888 |
tgcaggggtttacacgtaagta |
43076909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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