View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12681_low_7 (Length: 240)
Name: NF12681_low_7
Description: NF12681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12681_low_7 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 41 - 240
Target Start/End: Complemental strand, 33967196 - 33966997
Alignment:
| Q |
41 |
gtttagagttttaatcttattgcagttctatgactgaattcgaaaccaaaacctacgattacgcgcattttggaaacataactagtatatataaaccaaa |
140 |
Q |
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| T |
33967196 |
gtttagagttttaatcttattgcagttctatgactgaattcgaaaccaaaacctatgattacgcgcattttggaaacataactagtatatataaaccaaa |
33967097 |
T |
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| Q |
141 |
ctaaaacataccattctccatcattttttcattttcacaatcttctcttaagaatgtcaaacatgcattacattttcagcatgttgttatttcttcttct |
240 |
Q |
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| T |
33967096 |
ccaaaacataccattctccatcattttttcattttcacaatcttctcttaagaatgtcaaacatgcattacattttcagcatgttgttatttcttcttct |
33966997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 33967252 - 33967212
Alignment:
| Q |
18 |
cataatatatgaccaaatattttgtttagagttttaatctt |
58 |
Q |
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| T |
33967252 |
cataatatatgaccaaatattttgtttagagttttaatctt |
33967212 |
T |
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