View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12682_high_1 (Length: 945)
Name: NF12682_high_1
Description: NF12682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12682_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 777; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 777; E-Value: 0
Query Start/End: Original strand, 39 - 932
Target Start/End: Original strand, 50909285 - 50910152
Alignment:
| Q |
39 |
ataatttgcacagtaaaaggtccaaaataagtttcttccttcagcaacaacacaacagatcaggtaagagaattagtaaaaactagtcaactgcttgctt |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50909285 |
ataatttgcacagtaaaaggtccaaaataagtttcttccttcagcaacaacacaacagatcaggtaagagaattagtaaaaactagtcaactgcttgc-- |
50909382 |
T |
|
| Q |
139 |
gcacacatagaaaatgtggtctccacttgtttgaacttgagattcagcatagagacgcatacactatggcagcatatttcaacgagaaaactgaatttca |
238 |
Q |
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||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
50909383 |
----acacagaaaatgtggtctcaacttgtttgaacttgagattcagcatagagacgcatacactatggcagcatatttcaacgagaaaagtgaatttca |
50909478 |
T |
|
| Q |
239 |
cgcattcgaatttcaaagtccggatgtgtaaaagtcttaaaaaatgtattttacacaaagattttgaaatttgaatatgttaaaaattatgaatttgcac |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50909479 |
cgcattcgaatttcaaagtccggatgtgtaaaagtcttaaaaaatgtattttacacaaagattttgaaatttgaatatgttaaaaattatgaatttgcac |
50909578 |
T |
|
| Q |
339 |
tttgtcacaatagaagtttgaactatatatatggcaccttcaaactccaaaatcaagatgtgtaagaattaagattgatttataaatcaattttgggggc |
438 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
50909579 |
tttgtcacaatagaagtttgaactatatatatggcaccttcaaactccaaaatcaagatgtgtaagaattaagattgatttataaatcaatttgggggac |
50909678 |
T |
|
| Q |
439 |
gcacgagatgtaaggggtggaagaaaaatttcatgtcgttgtgtcatagatttatttaacttgaaaataggctaaacacatccacgattaaacccaaccc |
538 |
Q |
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| T |
50909679 |
gcacgagatgtaaggggtggaagaaaaatttcatgtcgttgtgtcatag----atttaacttgaaaataggc----------------taaacccaaccc |
50909758 |
T |
|
| Q |
539 |
aattcaaaagagacataaacaaaagtacacctacgctacgcaaggtcttgctaaagtgtgagtaaatttgaaaatatggctactctaatacaatttagca |
638 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50909759 |
aattcaaaagagacataaacaaaagtacacctacgctacgcaagctcttgctaaagtgtgagtaaatttgaaaatatggctactctaatacaatttagca |
50909858 |
T |
|
| Q |
639 |
ataatgcatggtaataattcaaaaagaggatcaagtaatacgatgacttcatctatctatgtagtattgttggaacaagagttagaaaaacatagtgttc |
738 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50909859 |
ataatgcatggtaataattcaaaaagaggatcaagtaatacgatgacttcatctatctatgtagtattgttggaacaagagttagaaaaacatagtgttc |
50909958 |
T |
|
| Q |
739 |
caacaagtattaatctattagacgcgtctttactgctttgggatggctaatacttaattgttgctggaacaggagccagttcttccaggttcctttccct |
838 |
Q |
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| T |
50909959 |
caacaagtattaatctattagacgcgtctttactgctttgggatggctaatacttaattgttgctggaacaggagccagttcttccaggttcctttccct |
50910058 |
T |
|
| Q |
839 |
tacgaagttcagggcgagaaagatgacaagatattcgctgtctgtgcatgaaattcagggcaagaaagacgacaagatattcgctgtctgtgct |
932 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50910059 |
tacgaagttcagggcgagaaagatgacaagatattcgctgtctgtgcatgaaattcagggcaagaaagacgacaagatattcgctgtctgtgct |
50910152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 737 - 835
Target Start/End: Original strand, 50901041 - 50901143
Alignment:
| Q |
737 |
tccaacaagtattaatctattagacgcgtctt---tactgctttgggatggctaatacttaattgttgctggaaca-ggagccagttcttccaggttcct |
832 |
Q |
| |
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|||| ||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||| || |
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| T |
50901041 |
tccaccaagtattaatctattagatgtgtcttctttactgctttgggatggctaatacttaattgttggtggaacagggagccggttcttccaggttgct |
50901140 |
T |
|
| Q |
833 |
ttc |
835 |
Q |
| |
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||| |
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| T |
50901141 |
ttc |
50901143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 595 - 697
Target Start/End: Original strand, 43548535 - 43548637
Alignment:
| Q |
595 |
tgtgagtaaatttgaaaatatggctactctaatacaatttagcaataatgcatggtaataattcaaaaagaggatcaagtaatacgatgacttcatctat |
694 |
Q |
| |
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||||||||||||| ||||||| || |||||||||||| | ||||||||||||| || |||||| |||||||||||||||| | | |||||||||||| |
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| T |
43548535 |
tgtgagtaaatttcaaaatattactcctctaatacaatctgacaataatgcatggaaacaattcataaagaggatcaagtaagaagtcgacttcatctat |
43548634 |
T |
|
| Q |
695 |
cta |
697 |
Q |
| |
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||| |
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| T |
43548635 |
cta |
43548637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 595 - 677
Target Start/End: Original strand, 29368771 - 29368852
Alignment:
| Q |
595 |
tgtgagtaaatttgaaaatatggctactctaatacaatttagcaataatgcatggtaataattcaaaaagaggatcaagtaat |
677 |
Q |
| |
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||||||||||||| |||| ||||||||| ||||||||||| ||||||| |||||||| | |||||||||||||| ||||||| |
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| T |
29368771 |
tgtgagtaaattttaaaa-atggctactgtaatacaatttcacaataatacatggtaacacttcaaaaagaggatgaagtaat |
29368852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 845 - 885
Target Start/End: Original strand, 43548853 - 43548893
Alignment:
| Q |
845 |
gttcagggcgagaaagatgacaagatattcgctgtctgtgc |
885 |
Q |
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| T |
43548853 |
gttcagggcgagaaagatgacaagataattgctgtctgtgc |
43548893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 847 - 885
Target Start/End: Original strand, 50901265 - 50901303
Alignment:
| Q |
847 |
tcagggcgagaaagatgacaagatattcgctgtctgtgc |
885 |
Q |
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| T |
50901265 |
tcagggcgagaaagatgacaagataattgctgtctgtgc |
50901303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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