View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12682_high_10 (Length: 398)
Name: NF12682_high_10
Description: NF12682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12682_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 39812117 - 39811741
Alignment:
| Q |
1 |
ttgtacatatattctacatacctttgttttagcagcaaatctatatatctcaggtacatcagattgtctatgatgtttagggtatgcgacatgtccatat |
100 |
Q |
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| T |
39812117 |
ttgtacatatattctacatacctttgttttagcagcaaatctatatatctcaggtacatcagattgtctatgatgtttagggtatgcgacatgtccatat |
39812018 |
T |
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| Q |
101 |
aggtcatatttgtcaatcagtttcaacacagttgtgagaacattgccactcccagaagacatatcttctatgtcatctctgtttcccattataagggtct |
200 |
Q |
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| T |
39812017 |
aggtcatacttgtcaatcagtttcaacacagttgtgagaacattgccactcccagaagacatatcttctatgtcatctctgtttcccattataagggtct |
39811918 |
T |
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| Q |
201 |
gtttagaaacatattagtcatttcacaattgctcaatcatattttccaccaagtgtggcaattgaattatgttaagttgttacttacaagattagctagt |
300 |
Q |
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| T |
39811917 |
gtttagaaacatatttgtcatttcacaattgc----tcatattttccaccaagtgtggcaattgaattatgttaagttgttacttacaagattagctagt |
39811822 |
T |
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| Q |
301 |
tttcttaaggaacgattttctccaaaagcttttaatagagttgttatgttcttctttggatctggccttgataaggctaat |
381 |
Q |
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| T |
39811821 |
tttcttaaggaacgattttctccaaaagcctttaatagagttgttatgttcttctttggatctggccttgataaggctaat |
39811741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 282 - 377
Target Start/End: Complemental strand, 15799255 - 15799160
Alignment:
| Q |
282 |
acttacaagattagctagttttcttaaggaacgattttctccaaaagcttttaatagagttgttatgttcttctttggatctggccttgataaggc |
377 |
Q |
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| T |
15799255 |
acttacaaggtttgcaagttctcttaagggacgactttcgccaaatgcttttagaagcgtggttaagttcttctttggatctggccttgataaggc |
15799160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 192
Target Start/End: Complemental strand, 15799460 - 15799339
Alignment:
| Q |
71 |
tgatgtttagggtatgcgacatgtccatataggtcatatttgtcaatcagtttcaacacagttgtgagaacattgccactcccagaagacatatcttcta |
170 |
Q |
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| T |
15799460 |
tgatgtttagggtatgcaacttgtccatagaggtcatacttatcaatcaacttcaacactgttacaagaacactagcatttcccgaagacatctcatcta |
15799361 |
T |
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| Q |
171 |
tgtcatctctgtttcccattat |
192 |
Q |
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| T |
15799360 |
cgtcatccctatttcccattat |
15799339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 47756669 - 47756745
Alignment:
| Q |
43 |
atatatctcaggtacatcagattgtctatgatgtttagggtatgcgacatgtccatataggtcatatttgtcaatca |
119 |
Q |
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| T |
47756669 |
atatatttcaggaacatcagattgtttgtggtgtttaggatatgccacttgcccatacaggtcatacttatcaatca |
47756745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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