View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12682_high_14 (Length: 282)
Name: NF12682_high_14
Description: NF12682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12682_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 273
Target Start/End: Original strand, 31649728 - 31649996
Alignment:
| Q |
16 |
caaaactaagtctcatttactttctaaaaacgatgtaatcgacatacagtttttaaatgctcttgttgtgtagatatacgccgctcaatctcttggacaa |
115 |
Q |
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| T |
31649728 |
caaaactaggtctcgtttactttctaaaaacgatgtaatcgacatacagtttttaaatgctcttgttgtgtagatatacgccgctcaatctcttggacaa |
31649827 |
T |
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| Q |
116 |
cttttcttagcaagcacgccacacgctaagatgaaaagaaaattgtgttagataatatacaaaaacaaaacatgtagtttcatgaatgcatttatgattt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31649828 |
cttttcttagcaagcacgccacacgctaagatgaaaagaaaattttgttagataatatacaaaaacaaaacatgtactttcatgaatgcatttatgattt |
31649927 |
T |
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| Q |
216 |
atat-----------acaaaagcaaatcaagagtatttatcatacaggaggtatttctccatttcttct |
273 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31649928 |
atatacaaaagtaacacaaaagcaaatcaagagtatttatcatacaggaggtatttctccatttcttct |
31649996 |
T |
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