View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12682_high_15 (Length: 282)
Name: NF12682_high_15
Description: NF12682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12682_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 54732640 - 54732370
Alignment:
| Q |
1 |
cacatcccttccctatcatccaacctgaaaatagaagcatatagacctaaaaactacatttattatttaggtcttgtttcatgtaacctcataataaacc |
100 |
Q |
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| T |
54732640 |
cacatcccttccctatcctccaacctgaaaatagaagcatatagacctaaaaactacatttattatttaggtcttgtttcatgtaacctcgtaataaacc |
54732541 |
T |
|
| Q |
101 |
atcattcttgctctaatttggaattaattgaagacttggaccacctcacatgtgccattctattccagcagattcattgtgcttcaatttcaattatttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54732540 |
atcattcttgctctaatttggaattaattgaagacttggaccacctcacatgtgccattctattccagcagattcattgtgcttcaatttcaattatttg |
54732441 |
T |
|
| Q |
201 |
ttaagattatcacattactgattgtatgatactagttttctacttttgtcattcaccatcttggatttcat |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54732440 |
ttaagattatcacattactgattgtatgatactagttttctacttttgtcattcaccatcttggatttcat |
54732370 |
T |
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