View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12682_high_16 (Length: 279)
Name: NF12682_high_16
Description: NF12682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12682_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 261
Target Start/End: Complemental strand, 5899999 - 5899754
Alignment:
| Q |
16 |
atgaagagatttccacacatgaatgcacacaactattggtctgctttgtcctttcaagcaaagacctgaagtcatgccttccattttcgcaaagcgtgac |
115 |
Q |
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| T |
5899999 |
atgaagagatttccacacatgaatgcacacaactattggtctgctttgtcctttcaagcaaagacctgaagtcatgccttccattttcgcaaagcgtgac |
5899900 |
T |
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| Q |
116 |
ctgaaaagagctaacacggcgtaggaaaggtcattaagatcatctctactattcgtgccggctgagttaatagataatatgtctccagttgagaattttg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5899899 |
ctgaaaagagctaacacggcgtaggaaaggtcattaagatcatctctactattcgtgccggctgagttaatagataatatgtctccagttgagaattttg |
5899800 |
T |
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| Q |
216 |
cagttgatgagccatctcttgattctccagcatatgcttcaaggaa |
261 |
Q |
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| T |
5899799 |
cagttgatgagccatctcttgattctccagcatatgcttcaaggaa |
5899754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 9871952 - 9871907
Alignment:
| Q |
217 |
agttgatgagccatctcttgattctccagcatatgcttcaaggaaa |
262 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
9871952 |
agttgatgatccatctcttgattctccagcatatgcttcaaggaaa |
9871907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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