View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12682_high_18 (Length: 265)
Name: NF12682_high_18
Description: NF12682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12682_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 26 - 254
Target Start/End: Original strand, 20602569 - 20602798
Alignment:
| Q |
26 |
attcaatcttcttcttttggaatcgatttattcttcattgattctaagtttctctccctctttaactcttgagatgtttcaatttctcttttcccaaaat |
125 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
20602569 |
attcaatcttcttcttttggaatcgatttattcttcattgattctaagtttctctccctctctaactcttgagatgtttcaatttctcttttcccaaaat |
20602668 |
T |
|
| Q |
126 |
tgttcatctattcc-tttcaccttcaaatccaccaccctaacctcccatcactatcaaccttt-tttcagctgccgtcaacctcgctgccatctctccct |
223 |
Q |
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||||||| |||||| ||||||||||| |||| ||||||||||||||| |||| |||||||||| ||||| ||||||||| |||||||||||||||||| | |
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| T |
20602669 |
tgttcatatattccttttcaccttcagatccgccaccctaacctcccgtcaccatcaacctttctttca-ctgccgtcagcctcgctgccatctctcctt |
20602767 |
T |
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| Q |
224 |
tattgatttctaaggttcgacatctcttcat |
254 |
Q |
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|||||| ||||| |||||||||||||||||| |
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| T |
20602768 |
tattgacttctagggttcgacatctcttcat |
20602798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 159; Significance: 9e-85; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 26 - 254
Target Start/End: Complemental strand, 8506942 - 8506717
Alignment:
| Q |
26 |
attcaatcttcttcttttggaatcgatttattcttcattgattctaagtttctctccctctttaactcttgagatgtttcaatttctcttttcccaaaat |
125 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
8506942 |
attcaatcttcttcttttggaatcgatgtattcttcattgattctaagtttctctccctctctaa---ttgagatgtttcaatttctcttttcccaaaat |
8506846 |
T |
|
| Q |
126 |
tgttcatctattcctttcaccttcaaatccaccaccctaacctcccatcactatcaaccttttttcagctgccgtcaacctcgctgccatctctccctta |
225 |
Q |
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| T |
8506845 |
tgttcatatattcctttcaccttcagatccgccaccctaacctcccgtcaccatcaacctttcttccgctgccgtcagcctcgctgccatctctcctata |
8506746 |
T |
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| Q |
226 |
ttgatttctaaggttcgacatctcttcat |
254 |
Q |
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|||| ||||| |||||||||||||||||| |
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| T |
8506745 |
ttgacttctagggttcgacatctcttcat |
8506717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 32015471 - 32015233
Alignment:
| Q |
19 |
ttcaccaattcaatcttcttcttttggaatcgatttattcttcattgattctaagtttctctccctctttaactcttgagatgtttcaatttctcttttc |
118 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32015471 |
ttcactaattcaatattcttcttttggaatcgatttattcttcattgattctcagtttctctccctctctaactcttgagatgtttcaatttctcttttc |
32015372 |
T |
|
| Q |
119 |
ccaaaattgttcatctattcctttcaccttcaaatccaccaccct---aacctcccatcactatcaaccttttttcagctgccgtcaacctcgctgccat |
215 |
Q |
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||||||||||||| |||||| ||||||||| ||| | | | |||||||| |||||||||||||| ||| || || |||||||||| ||| | |
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| T |
32015371 |
ccaaaattgttcacgtattcccttcaccttcttctcccaaaacgtttcaacctcccgccactatcaacctttcttccgccgctgtcaacctcgttgctgt |
32015272 |
T |
|
| Q |
216 |
ctctcccttattgatttctaaggttcgacatctcttcat |
254 |
Q |
| |
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|||||||||||||| || || |||||||||||||||||| |
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| T |
32015271 |
ctctcccttattgacttttagggttcgacatctcttcat |
32015233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 25 - 151
Target Start/End: Original strand, 51647236 - 51647362
Alignment:
| Q |
25 |
aattcaatcttcttcttttggaatcgatttattcttcattgattctaagtttctctccctctttaactcttgagatgtttcaatttctcttttcccaaaa |
124 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
51647236 |
aattcaatcttcttcttttggaatcaatttattcttcattgattctaagtttctctccctctctaactcttgagatgtttcaatttctcttttcccaaaa |
51647335 |
T |
|
| Q |
125 |
ttgttcatctattcctttcaccttcaa |
151 |
Q |
| |
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|||||||| ||||||||||||| |||| |
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| T |
51647336 |
ttgttcatatattcctttcaccatcaa |
51647362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 173 - 254
Target Start/End: Original strand, 51647353 - 51647434
Alignment:
| Q |
173 |
tcactatcaaccttttttcagctgccgtcaacctcgctgccatctctcccttattgatttctaaggttcgacatctcttcat |
254 |
Q |
| |
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|||| |||||||||| ||| |||| ||||| |||||||||||||||||| ||||||| ||||| |||||||||||||||||| |
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| T |
51647353 |
tcaccatcaacctttcttccgctgtcgtcagcctcgctgccatctctcctttattgacttctagggttcgacatctcttcat |
51647434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 149
Target Start/End: Original strand, 23739036 - 23739157
Alignment:
| Q |
30 |
aatcttcttcttttggaatcgatttattcttcattgattctaagtttctctccctctttaactcttgagatgtttcaatttct---cttttcccaaaatt |
126 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||| | ||||| |||| | ||| ||||||||||||||||||| |||| || ||||| |
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| T |
23739036 |
aatcttcttcttttggaatc-atttattcttcattgattctcaatttctttcccattccaacgtttgagatgtttcaatttcttctctttaccaaaaatg |
23739134 |
T |
|
| Q |
127 |
gttcatctattcctttcaccttc |
149 |
Q |
| |
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|||||||||||||||||| |||| |
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| T |
23739135 |
gttcatctattcctttcatcttc |
23739157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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