View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12682_high_4 (Length: 494)

Name: NF12682_high_4
Description: NF12682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12682_high_4
NF12682_high_4
[»] chr2 (1 HSPs)
chr2 (1-494)||(12267756-12268249)


Alignment Details
Target: chr2 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Original strand, 12267756 - 12268249
Alignment:
Q  1 atggagagatgttttataaggattcttacatgtttcaaaatcctccattgaataagcagcctagggctaagaatgtttggaaatcatttgttcctccttc 100  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12267756 atggtgagatgttttataaggatgcttacatgtttcaaaatcctccattgtataagcagcctagggctaagaatgtttggaaatcatttgttcctccttc 12267855  T
Q  101 cagttcaatgccatcagatcacacaatgaataaatgacaaagctatagatactcatgctatgaattaaaatctaataacttgaacccttcccactataga 200  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12267856 cagttcaatgccatcagatcacgcaatgaataaatgacaaagctatagatactcatactatgaattaaaatctaataacttgaacccttcccactataga 12267955  T
Q  201 aattaaagaggccttcaaagttgtcaatttggatttgattctatccacaactttctcttcaacaagaagattattgttgtagacactatcattagtttga 300  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12267956 aattaaagatgccttcaaagttgtcaatttggatttgattctatccacaactttctcttcaacaagaagattattgttgtagacactatcattagtttga 12268055  T
Q  301 ctctgaatttgatgaaggttagatttagttacttggaaattgatgttaatgtccccgaacacattcttattccaatccttatgtttgactttcaaggatt 400  Q
    ||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12268056 ctctgaatttgatgaaggttgtattcagttacttggaaattgatgttaatgtccccgaacacattcttattccaatccttatgtttgactttcaaggatt 12268155  T
Q  401 tgatgttttgactaagctcaaacatggggcacctagcgtaaacctcattccaagttttgtttaatgatattgatacattcaagatgagaatacc 494  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12268156 tgatgttttgactaagcacaaacatggggcacctagtgtaaacctcattccaagttttgtttaatgatattgatacattcaagatgagaatacc 12268249  T

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