View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12682_low_10 (Length: 435)
Name: NF12682_low_10
Description: NF12682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12682_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 3130990 - 3130566
Alignment:
| Q |
1 |
tgaccctgagattctgtaacataagcatatcaattggttacatgtatgcgcaatgtataattgtacatagggaaacttatgattgaaattaaattaatac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3130990 |
tgaccctgagattctgtaacataagcatatcaattggttacatgtatgcgcaatgtataattgtacatagggaaacttatgattgaaattaaattaatac |
3130891 |
T |
|
| Q |
101 |
aagtcttctgaagttctttcttgttcaaattgatttcagctttaaatttcgattgagtattcatgtttcgacctcaaacaatactaaattat-----ttc |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3130890 |
aagtcttctgaagttctttcttgttcaaattgatttcagctttaaatttcgattgagtattcatgtttcgacctcaaacaatactaaattattgaaattc |
3130791 |
T |
|
| Q |
196 |
cgagcaaacaacgaactttagaggaatataacttagtatctagacacttagattattggaaggtccttcctatataaactctaggttccttgtcagtgta |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3130790 |
cgagcaaacaacgaactttagaggaatataacttagtatgtagacacttagattattggaaggtccttcctatataaactctaggttccttgtcagtgta |
3130691 |
T |
|
| Q |
296 |
catagaattataaaataaaataaactgatgtggtttgtatt--agagtaaaaaagaggaactcaccataaccatatccttcacacaaccatttctcattt |
393 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
3130690 |
catggaattataaaataaaataaactgatgtggtttgtattagagagtaaaaaagaggaa-tccccataaccatatccttcacacaaccatttctcattt |
3130592 |
T |
|
| Q |
394 |
atcttcccattttttctgtactatca |
419 |
Q |
| |
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| T |
3130591 |
atcttcccactttttctgtactatca |
3130566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 10 - 334
Target Start/End: Complemental strand, 3127571 - 3127236
Alignment:
| Q |
10 |
gattctgtaacata--agcatatcaattggttacatgtatgcgcaat------gtataattgtacatagggaaacttatgattgaaattaaattaataca |
101 |
Q |
| |
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|||||||||||||| ||||||||||||| |||||| ||||| |||| || ||| ||| ||| ||||| |||||||||||||||||||||| || |
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| T |
3127571 |
gattctgtaacatataagcatatcaattgattacatatatgcacaatattaatgtgtaactgtgtataaggaaaattatgattgaaattaaattaatgca |
3127472 |
T |
|
| Q |
102 |
agtcttctgaagttctttcttgttcaaattgatttcagctttaaatttcgattgagtattcatgtttcgacctcaaacaatactaaattatt-----tcc |
196 |
Q |
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||||||| ||||| ||||| |||||||| |||||||||||||| ||||||||||||||||| |||| || |||||||| |||| |||||| | | |
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| T |
3127471 |
agtcttccaaagttgtttctagttcaaatgtatttcagctttaaaattcgattgagtattcatttttcaacttcaaacaaaactacattattgaagttgc |
3127372 |
T |
|
| Q |
197 |
gagcaaacaacgaactttagaggaatataacttagtatctagacacttagattattggaaggtccttcctatataaactctaggttccttgtcagtgtac |
296 |
Q |
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| T |
3127371 |
gagcaaacaactaattttaaacgaatgtaacttagtatatacacacttacgttattggaagttccttcttatataaactctaggttccttgtcagtgtac |
3127272 |
T |
|
| Q |
297 |
atagaattataaaataaaataaactgatgtggtttgta |
334 |
Q |
| |
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| |||||||||| ||||||||||||| ||| ||||| |
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| T |
3127271 |
ttggaattataaa--aaaataaactgatttggattgta |
3127236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 345 - 419
Target Start/End: Complemental strand, 3126109 - 3126034
Alignment:
| Q |
345 |
aaagaggaactcaccataaccatatccttcacacaaccatttctcatttatct-tcccattttttctgtactatca |
419 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||| ||||||| |||||||| |
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| T |
3126109 |
aaagaggaactcaccatcaccatatccttcacacaaccatttctcatttatatctccccatttttctatactatca |
3126034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 192
Target Start/End: Complemental strand, 3124731 - 3124614
Alignment:
| Q |
75 |
acttatgattgaaattaaattaatacaagtcttctgaagttctttcttgttcaaa-ttgatttcagctttaaatttcgattgagtattcatgtttcgacc |
173 |
Q |
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|||||||||||||||||||| || | ||||||| ||||||| ||||| ||| ||| |||||||| |||||||||| | ||| ||| ||||||||| | |
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| T |
3124731 |
acttatgattgaaattaaatgaa-aaaagtcttgtgaagttttttctagttgaaatttgatttctgctttaaattgaaaatgaatatccatgtttcgcct |
3124633 |
T |
|
| Q |
174 |
tcaaacaatactaaattat |
192 |
Q |
| |
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|||||||| |||| ||||| |
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|
| T |
3124632 |
tcaaacaacactacattat |
3124614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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