View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12682_low_11 (Length: 417)
Name: NF12682_low_11
Description: NF12682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12682_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 1628673 - 1628500
Alignment:
| Q |
1 |
tggttggaaccacatgacctatgagtccttttcttagcgcaattcatattatatttatttgttttatc-ttgttcttaatgcttttcaaggtctaaccca |
99 |
Q |
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| T |
1628673 |
tggttggaaccacatgacctatgagtccttttcttagcgcaattcatattatatttatttgttttatctttgttcttaatgcttttcaaggactaaccca |
1628574 |
T |
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| Q |
100 |
ttttgaattaatttgaggttgtaactcgcta--ttaacactagtttttgcagtcgtgcctagatttatcaattg |
171 |
Q |
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| T |
1628573 |
ttttgaattaatttgaggttgtaactcgctactataacactagtttttgcagtcgtacctagatttatcaattg |
1628500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 69 - 279
Target Start/End: Complemental strand, 32856004 - 32855787
Alignment:
| Q |
69 |
ttgttcttaatgcttttcaaggtctaacccattttgaattaatttgaggttgtaactcgctattaacactagtttttgcagtcgtgcctagatttatcaa |
168 |
Q |
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| T |
32856004 |
ttgttcttaatgcttttcaagttctgatcaattttgaattgattttaggttatatctcactattaacattaggttttgtaagtgtacctagatatgttat |
32855905 |
T |
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| Q |
169 |
tt-----gctagttcacctagacat-aggttttaattatta--atgttgtttaacgtgctcaaatgcttttgataatatgagattcaacatacacataag |
260 |
Q |
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| T |
32855904 |
ttgctaagctagttcacctagacataaggttttgattagtatgactttgtttaacgtgatcaaataattttgataatgtgagattcacca-agacatata |
32855806 |
T |
|
| Q |
261 |
gtttctatattagataaac |
279 |
Q |
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| T |
32855805 |
gtttctaaattagataaac |
32855787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 20930910 - 20930847
Alignment:
| Q |
207 |
ttgtttaacgtgctcaaatgcttttgataatatgagattcaacatacacataaggtttctatatta |
272 |
Q |
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| T |
20930910 |
ttgtttaacgtgctcaaatgcttttaataatatgacatt-tacatagacataagg-ttctatatta |
20930847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 364 - 395
Target Start/End: Complemental strand, 31955421 - 31955390
Alignment:
| Q |
364 |
aaaaacgaattttattttatttttcaagaatt |
395 |
Q |
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| T |
31955421 |
aaaaacgaattttattttatttttcaagaatt |
31955390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 32494194 - 32494145
Alignment:
| Q |
39 |
gcaattcatattatatttatttgttttatcttgttcttaatgcttttcaa |
88 |
Q |
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|||||||| ||||| ||||||| | |||||||||||||||||||||||| |
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| T |
32494194 |
gcaattcaaattatgtttatttaatatatcttgttcttaatgcttttcaa |
32494145 |
T |
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