View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12682_low_16 (Length: 287)
Name: NF12682_low_16
Description: NF12682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12682_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 5 - 268
Target Start/End: Original strand, 6603852 - 6604115
Alignment:
| Q |
5 |
ggagaagcaaaggcggaaactgtgagtgcctacgaatttgttgagcacccatattttttctgttgttttggcgatattgtgttcaaggcggctcaaaaac |
104 |
Q |
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| T |
6603852 |
ggagaaccaacggcggaaactgtgagtgcctacgaatttgttgagcacccatatttttcctgttgttttggcgatattgtgttcaaggcggctcaaaaac |
6603951 |
T |
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| Q |
105 |
agtctggttacctagctgaaaaatacaatgcaaattcaatgagtgacttgaatgtggaagctcccctgaaaaacctgtaccaaatcagttattcgaataa |
204 |
Q |
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| T |
6603952 |
agtctggttacctagctgaaaaatacaatgcaaattcaatgagtgacttgaatgtggaagctcccctgaaaaacctgtaccaaatcagttatccgaataa |
6604051 |
T |
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| Q |
205 |
ctcggtaggtaactgtcgcctgtcctgtattggcaatgttactggtttcaaagatggtcatgtg |
268 |
Q |
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| T |
6604052 |
ctcggtaggtaactgtcgcctgtcctgtattggcaatgttactggtttcaaagatggtcatgtg |
6604115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 35441058 - 35441162
Alignment:
| Q |
19 |
ggaaactgtgagtgcctacgaatttgttgagcacccatattttttctgttgttttggcgatattgtgttcaaggcggctcaaaaacagtctggttaccta |
118 |
Q |
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| T |
35441058 |
ggaaactgtgagtgcctacgaactagttgagcacccagattactcctgtttttatggtgatattatgttcaaggcggctcaaaaacaatttggttaccaa |
35441157 |
T |
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| Q |
119 |
gctga |
123 |
Q |
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| T |
35441158 |
gctga |
35441162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 4 - 268
Target Start/End: Complemental strand, 3699692 - 3699428
Alignment:
| Q |
4 |
aggagaagcaaaggcggaaactgtgagtgcctacgaatttgttgagcacccatattttttctgttgttttggcgatattgtgttcaaggcggctcaaaaa |
103 |
Q |
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||||||| ||| | ||||||||||||||||||| ||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3699692 |
aggagaaccaacgacggaaactgtgagtgcctatgaacttgttgagcacccagatttttcctgttgttttggcgatattgtgttcaaggcggctcaaaaa |
3699593 |
T |
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| Q |
104 |
cagtctggttacctagctgaaaaatacaatgcaaattcaatgagtgacttgaatgtggaagctcccctgaaaaacctgtaccaaatcagttattcgaata |
203 |
Q |
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||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
3699592 |
cagcccggttacctagctgaaaaatataatgcaaattcaatgagtgacttgaatgtggaagctcctctgaaaaacctgtaccaaatcagttatccgaata |
3699493 |
T |
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| Q |
204 |
actcggtaggtaactgtcgcctgtcctgtattggcaatgttactggtttcaaagatggtcatgtg |
268 |
Q |
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||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3699492 |
gctctgtaggtaactgtcacctgtcctgcattggcaatgttactggtttcaaagatggtcatgtg |
3699428 |
T |
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