View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12682_low_29 (Length: 240)
Name: NF12682_low_29
Description: NF12682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12682_low_29 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 45542577 - 45542353
Alignment:
| Q |
17 |
agatagtttgttcattgttatatataaaatgtgtaagtttgt---atggctgtggaaattactattgtttattttattttgacaatactatatgctagtg |
113 |
Q |
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| T |
45542577 |
agatagtttgttcattgttgt-tataaaatgtgtaagtttgttgtatggctgtggaaattactattgtttattttattttgacaatactatatgctagtg |
45542479 |
T |
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| Q |
114 |
ttgtaaaactgtg-gttatgagataaaatttttaaaaaatgtattttgatatatgattgtactatgcatttttattttaatcaatagtgtgaaattcata |
212 |
Q |
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| T |
45542478 |
ttgtaaagctgtacgttatgagataagatttttaaaaaatgtatt--gatatatgattgtactgtgcatttttattttaatcaatagtgtgaaattcata |
45542381 |
T |
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| Q |
213 |
ctttggcatggtgttattttcgtgtttt |
240 |
Q |
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| T |
45542380 |
ctttggcatggtgttattttcgtgtttt |
45542353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 45529497 - 45529373
Alignment:
| Q |
21 |
agtttgttcattgttatatataaaatgtgtaagtttgtatggctgtggaaattactatt-----gtttattttattttgacaatactatatgctagtgtt |
115 |
Q |
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| T |
45529497 |
agtttgttcatgattatatgtaaaatgtataagtttgtattggtgtggaa--tactatatgctagtttattttgttttgacaatactatatgctagtgtt |
45529400 |
T |
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| Q |
116 |
gtaaaactgtggttatgagataaaatt |
142 |
Q |
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| T |
45529399 |
gtaaggctgtgattatgagatcaaatt |
45529373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 240
Target Start/End: Complemental strand, 45528362 - 45528287
Alignment:
| Q |
161 |
atatatgattgtactatgcatttttattttaatcaatagtgtgaaattcatactttggcatggtgttattttcgtgtttt |
240 |
Q |
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| T |
45528362 |
atatatgattgtaccatgcacttctattttaatcaatagtgggaaattc----tatgacatggtattattttcgtgtttt |
45528287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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