View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12682_low_3 (Length: 597)
Name: NF12682_low_3
Description: NF12682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12682_low_3 |
 | |
|
| [»] scaffold0070 (2 HSPs) |
| | |
|
| [»] scaffold0078 (3 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 473; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 580
Target Start/End: Original strand, 39815260 - 39815856
Alignment:
| Q |
1 |
atgaaaatcatgattatcggattcatcaagataattaatcattaagattgaattattatatgaaattagaacgcacttacttgaaaaccatgattaccgg |
100 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
39815260 |
atgaaaattatgattatcggattcatcgagataatcaatcatcaagattgaattattatatgaaattagaacgcacttacttgaaaaccatgattatcgg |
39815359 |
T |
|
| Q |
101 |
attcgctgagatttcggacaagagtcttcctttgcctttcacatactctggaacttacggttttcgatggggcaaaccactaatgagcagatagttagag |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39815360 |
attcgccgagatttcggacaagagtcttcctttgcctttcacatactccggaacttacggttttcgatggggcaaaccactaatgagcagatagttagag |
39815459 |
T |
|
| Q |
201 |
ctatgtcaaagtagacccaacctct-----------------ctaatgcaatcaacacaagtacctagatcatcaaactttaagaaagatataatattta |
283 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
39815460 |
ttatgtcaaagtggacccaacctctatttaataaatttgcttctaatgcaatcaacacaagtacctagatcatcaaactttaagaaagatagaatattta |
39815559 |
T |
|
| Q |
284 |
ctttgattaatttctcaggcatcattttccaataaatatgatccaagtgtttatgccataaagtaaagaatatctttctcaacattagactttatagcaa |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39815560 |
ctttgattaatttctcaggcatcattttccaataaatatgatccaagtgtttatgccataaagtaaagaatatctttctcaacattagactttatagcaa |
39815659 |
T |
|
| Q |
384 |
caaaaattttgacaacgaatgacgaagcaaggttatgtgaagtcaaagacaacttatacaaaccatcaataaaagatccagggagtcatgaaccatctac |
483 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
39815660 |
caaaaattttgacaacgaaagacgaagcaaggttatgtgaaatcaaagacaacttatacaaaccatcaataaaagatccaggaagtcatgaatcatctac |
39815759 |
T |
|
| Q |
484 |
tagagataatttatatagatgaacaaaggataaagtaaggttatgtgagtgcaactcaaacttagtttcatacctcaaagagtaaaactaaaacaag |
580 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39815760 |
tagagacaatttatatagatgaacaaaggatgaagtaaggttatgtgagtgcaactcaaacttagtttcatacctccaagagtaaaactaaaacaag |
39815856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 6862698 - 6862840
Alignment:
| Q |
53 |
ttattatatgaaattagaacgcacttacttga------aaaccatgattacc-ggattcgctgagatttcggacaagagtcttcctttgcctttcacata |
145 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||| ||| ||| |||||||| ||||| ||||||||||| |||||||||| |
|
|
| T |
6862698 |
ttattatatgaaattagaacacacttacttgatgaatgaaaccatgattacccggactcgttgagatttgagacaaaagtcttccttttcctttcacatg |
6862797 |
T |
|
| Q |
146 |
ctctggaacttacggttttcgatggggcaaaccactaatgagca |
189 |
Q |
| |
|
||| | | ||| ||||| | ||||||||||||||||||||||| |
|
|
| T |
6862798 |
ctccag-atttagggtttccaatggggcaaaccactaatgagca |
6862840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 39815212 - 39815283
Alignment:
| Q |
33 |
aattaatcattaagattgaattattatatgaaattagaacgcacttacttgaaaaccatgattaccggattc |
104 |
Q |
| |
|
|||||||| | ||||| |||||||||||||||||||||| |||||||| |||||| ||||||| ||||||| |
|
|
| T |
39815212 |
aattaatcgtcaagatcgaattattatatgaaattagaatgcacttacatgaaaattatgattatcggattc |
39815283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 167; Significance: 4e-89; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 225 - 569
Target Start/End: Original strand, 25859814 - 25860156
Alignment:
| Q |
225 |
tctaatgcaatcaacacaagtacctagatcatcaaactttaagaaagatataatatttactttgattaatttctcaggcatcattttccaataaatatga |
324 |
Q |
| |
|
|||||||||||| |||||||| || ||||||||||||||||||||| || ||||| |||||||||||||||||||| || ||| ||||| ||||||| |
|
|
| T |
25859814 |
tctaatgcaatccacacaagtgtctggatcatcaaactttaagaaaggtagaatatgtactttgattaatttctcag-cac--tttcccaatgaatatga |
25859910 |
T |
|
| Q |
325 |
tccaagtgtttatgccataaagtaaagaatatctttctcaacattagactttatagcaacaaaaattttgacaacgaatgacgaagcaaggttatgtgaa |
424 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||| ||||| ||||||| ||||| ||||||| ||||||||||||| |||||||||||| |||||||| |
|
|
| T |
25859911 |
tccaagtgcttatgccataaagtaaaggatatcttcctcaagattagaccttatacaaacaaaagttttgacaacgaaagacgaagcaaggctatgtgaa |
25860010 |
T |
|
| Q |
425 |
gtcaaagacaacttatacaaaccatcaataaaagatccagggagtcatgaaccatctactagagataatttatatagatgaacaaaggataaagtaaggt |
524 |
Q |
| |
|
||||| || |||||| | |||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||| ||| || || |||||| || |
|
|
| T |
25860011 |
gtcaaggataacttacataaaccatcaacaaaagatccatggagtcatgaaccatcaactagagataatttatatagatcaactaaagaggaagtaaagt |
25860110 |
T |
|
| Q |
525 |
tatgtgagtgcaa-ctcaaacttagtttcatacctcaaagagtaaa |
569 |
Q |
| |
|
||| ||||| ||| ||||||||||||||| |||||| || |||||| |
|
|
| T |
25860111 |
tatatgagttcaatctcaaacttagtttcctacctctaacagtaaa |
25860156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 53 - 191
Target Start/End: Original strand, 25856931 - 25857068
Alignment:
| Q |
53 |
ttattatatgaaattagaacgcacttacttgaaaaccatgattaccggattcgctgagatttcggacaagagtcttcctttgcctttcacatactctgga |
152 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
25856931 |
ttattatatgaaattagaacacacttacttgaaaaccatgattatcggattcgtcaagatttaagacaagagtcttcctttgcctttcacatgctccgga |
25857030 |
T |
|
| Q |
153 |
acttacggttttcgatggggcaaaccactaatgagcaga |
191 |
Q |
| |
|
||||| | |||||||| |||||||||||||||||||||| |
|
|
| T |
25857031 |
acttaggattttcgat-gggcaaaccactaatgagcaga |
25857068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 53 - 190
Target Start/End: Complemental strand, 17368012 - 17367877
Alignment:
| Q |
53 |
ttattatatgaaattagaacgcacttacttgaaaaccatgattaccggattcgctgagatttcggacaagagtcttcctttgcctttcacatactctgga |
152 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||| || ||| |||| ||||||| ||||| |||||||| ||||||||| ||| ||| | |
|
|
| T |
17368012 |
ttattatatgaaattagaacacacttacttaaaaaccatgatcactggactcgccgagatttgagacaa-agtcttcccttgcctttcgcatgctc-caa |
17367915 |
T |
|
| Q |
153 |
acttacggttttcgatggggcaaaccactaatgagcag |
190 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
17367914 |
acttagggttttcaatggggcaaaccactaatgagcag |
17367877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 25863763 - 25863896
Alignment:
| Q |
53 |
ttattatatgaaattagaacgcacttacttgaaaaccatgattaccggattcgctgagatttcggacaagagtcttcctttgcctttcacatactctgga |
152 |
Q |
| |
|
||||||||||||||| |||| |||||||||| ||| ||||||||||| |||||| ||||| ||||| |||||||||||||||||||||| || || |
|
|
| T |
25863763 |
ttattatatgaaatttgaacacacttacttggaaatcatgattaccgaattcgccgagatga--gacaa-agtcttcctttgcctttcacatgcttcaga |
25863859 |
T |
|
| Q |
153 |
acttacggttttcgatggggcaaaccactaatgagca |
189 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
25863860 |
acttagggttttcgatggggcaaaccactaataagca |
25863896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 53 - 191
Target Start/End: Complemental strand, 6566091 - 6565954
Alignment:
| Q |
53 |
ttattatatgaaattagaacgcacttacttgaaaaccatgattaccggattcgctgagatttcggacaagagtcttcctttgcctttcacatactctgga |
152 |
Q |
| |
|
|||||||||| ||||| ||| |||||||||| ||||||||| |||| | |||| ||||||| || || ||||||| |||||||||||||| ||| | |
|
|
| T |
6566091 |
ttattatatggaattataacacacttacttggaaaccatgaccaccgaactcgccgagatttgagaaaaaagtcttcatttgcctttcacatgctccag- |
6565993 |
T |
|
| Q |
153 |
acttacggttttcgatggggcaaaccactaatgagcaga |
191 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6565992 |
acttagggttttcgatggggcaaaccactaatgagcaga |
6565954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 74 - 200
Target Start/End: Complemental strand, 25473965 - 25473837
Alignment:
| Q |
74 |
cacttacttgaaaaccatgattac-cggattcgctgagatttcggacaagagtcttcctttgcctttcacatactctggaacttacggttttcgatgggg |
172 |
Q |
| |
|
|||||||||||||||||||||||| || | || |||||||| ||||||||| |||||||| ||||||||| ||| ||||||| ||||||| | || |
|
|
| T |
25473965 |
cacttacttgaaaaccatgattactcgaactcactgagattcgagacaagagtattcctttgtctttcacattctccagaacttagggttttcaaaggaa |
25473866 |
T |
|
| Q |
173 |
caaaccactaatgagcag-atagttagag |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||| |
|
|
| T |
25473865 |
caaaccactaatgagcagaatagttagag |
25473837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 25716202 - 25716165
Alignment:
| Q |
152 |
aacttacggttttcgatggggcaaaccactaatgagca |
189 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
25716202 |
aacttagggttttcaatggggcaaaccactaatgagca |
25716165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 156; Significance: 1e-82; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 225 - 511
Target Start/End: Complemental strand, 25405324 - 25405040
Alignment:
| Q |
225 |
tctaatgcaatcaacacaagtacctagatcatcaaactttaagaaagatataatatttactttgattaatttctcaggcatcattttccaataaatatga |
324 |
Q |
| |
|
|||||||||||| |||||||||||| ||| ||||| |||||| |||| || ||||||||||| |||||||||| || || | || ||||||||||| | |
|
|
| T |
25405324 |
tctaatgcaatccacacaagtacctggatgatcaagctttaaaaaaggtagaatatttacttggattaatttcacatgcct--ttcaccaataaatatta |
25405227 |
T |
|
| Q |
325 |
tccaagtgtttatgccataaagtaaagaatatctttctcaacattagactttatagcaacaaaaattttgacaacgaatgacgaagcaaggttatgtgaa |
424 |
Q |
| |
|
|||||||| |||| ||||||||||||| || || | ||||||||||||| ||||||||||||||| |||||||||||| |||||||| | |||||||||| |
|
|
| T |
25405226 |
tccaagtgcttataccataaagtaaaggatgtcctcctcaacattagaccttatagcaacaaaaaatttgacaacgaaagacgaagctaagttatgtgaa |
25405127 |
T |
|
| Q |
425 |
gtcaaagacaacttatacaaaccatcaataaaagatccagggagtcatgaaccatctactagagataatttatatagatgaacaaag |
511 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
25405126 |
gtcaaagacaacttatataaaccatcaacaaaagatccagggagtcatgaaccatctactagagaccatttgtatagatgaacaaag |
25405040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 225 - 483
Target Start/End: Complemental strand, 25377341 - 25377084
Alignment:
| Q |
225 |
tctaatgcaatcaacacaagtacctagatcatcaaactttaagaaagatataatatttactttgattaatttctcaggcatcattttccaataaatatga |
324 |
Q |
| |
|
||||||||||||||||| ||||||| ||| |||||||||| | |||| ||||||||||||||||||||||||| || | | || ||||||||||| | |
|
|
| T |
25377341 |
tctaatgcaatcaacactagtacctggatgatcaaacttttaaaaaggtataatatttactttgattaatttcatagacct--ttcaccaataaatatta |
25377244 |
T |
|
| Q |
325 |
tccaagtgtttatgccataaagtaaagaatatctttctcaacattagactttatagcaacaaaaa-ttttgacaacgaatgacgaagcaaggttatgtga |
423 |
Q |
| |
|
|||||||| |||||||||||||||||| || |||||||||||||||||| ||||||||||||||| |||||||| |||| |||||||| ||||||||||| |
|
|
| T |
25377243 |
tccaagtgcttatgccataaagtaaaggatgtctttctcaacattagaccttatagcaacaaaaacttttgacaccgaaagacgaagctaggttatgtga |
25377144 |
T |
|
| Q |
424 |
agtcaaagacaacttatacaaaccatcaataaaagatccagggagtcatgaaccatctac |
483 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25377143 |
agtcaaagacaacttatataaaccatcaacaaaagatccagggagtcatgaaccatctac |
25377084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 25378132 - 25377996
Alignment:
| Q |
53 |
ttattatatgaaattagaacgcacttacttgaaaaccatgattaccggattcgctgagatttcggacaagagtcttcctttgcctttcacatactctgga |
152 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| || ||||||| ||||||| |||||||||||||||||| |||||||| ||||||| |
|
|
| T |
25378132 |
ttattatatgaaattagaacacacttacttgaaaaccatgatcactagattcgccgagatttgaaacaagagtcttcctttgcttttcacatgctctgga |
25378033 |
T |
|
| Q |
153 |
acttacggttttcgatggggcaaaccactaatgagca |
189 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
25378032 |
acttagggttttcgatggggcaaaccattaatgagca |
25377996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 39 - 191
Target Start/End: Complemental strand, 25406213 - 25406060
Alignment:
| Q |
39 |
tcattaagattgaattattatatgaaattagaacgcacttacttgaaaaccatgattaccggattcgctgagatttcggacaagagt--cttcctttgcc |
136 |
Q |
| |
|
|||| ||||| || |||||||||||||||||||| ||||||||||||||||||||| || | |||||| ||||||| ||||||||| |||||||| || |
|
|
| T |
25406213 |
tcatcaagatcgagttattatatgaaattagaacacacttacttgaaaaccatgatcacag-attcgccgagatttgagacaagagtgtcttccttttcc |
25406115 |
T |
|
| Q |
137 |
tttcacatactctggaacttacggttttcgatggggcaaaccactaatgagcaga |
191 |
Q |
| |
|
|||||||| ||| |||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
25406114 |
tttcacatgctccggaacttagggttttcgatggggcaaaccattaatgagcaga |
25406060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 145; Significance: 5e-76; HSPs: 2)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 225 - 579
Target Start/End: Original strand, 55262 - 55604
Alignment:
| Q |
225 |
tctaatgcaatcaacacaagtacctagatcatcaaactttaagaaagatataatatttactttgattaatttctcaggcatcattttccaataaatatga |
324 |
Q |
| |
|
|||||||||||| |||||||||||| ||| |||||||||||| |||| || ||||||||||| |||||||||| ||||| | || ||||||||||| | |
|
|
| T |
55262 |
tctaatgcaatccacacaagtacctggatgatcaaactttaaaaaaggtagaatatttacttggattaatttcacaggcct--ttcaccaataaatatta |
55359 |
T |
|
| Q |
325 |
tccaagtgtttatgccataaagtaaagaatatctttctcaacattagactttatagcaacaaa-aattttgacaacgaatgacgaagcaaggttatgtga |
423 |
Q |
| |
|
|||||||| ||||| |||||||||||| || |||| ||||||||||||| ||||||||||||| ||||||||| ||||| || ||||| ||||||||||| |
|
|
| T |
55360 |
tccaagtgcttatgtcataaagtaaaggatgtcttcctcaacattagaccttatagcaacaaagaattttgacgacgaaagaagaagctaggttatgtga |
55459 |
T |
|
| Q |
424 |
agtcaaagacaacttatacaaaccatcaataaaagatccagggagtcatgaaccatctactagagataatttatatagatgaacaaaggataaagtaagg |
523 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| || || | |
|
|
| T |
55460 |
agtcaaagacaacttatataaaccatcaacaaaagatccagggagtcatgaaccatctacg------------tatagatgaacaaaggatgaaacaaag |
55547 |
T |
|
| Q |
524 |
ttatgtgagtgcaa-ctcaaacttagtttcatacctcaaagagtaaaactaaaacaa |
579 |
Q |
| |
|
||| |||||| || |||||||||| ||| |||||| ||||||||||||||||||| |
|
|
| T |
55548 |
ttacgtgagtttaatctcaaacttacttttctacctccaagagtaaaactaaaacaa |
55604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 39 - 200
Target Start/End: Original strand, 54342 - 54505
Alignment:
| Q |
39 |
tcattaagattgaattattatatgaaattagaacgcacttacttgaaaaccatgattaccggattcgctgagatttcggacaagagt--cttcctttgcc |
136 |
Q |
| |
|
|||| ||||| || |||||||||||||||||||| ||||||||||||||||||||| || | |||||| ||||||| ||||||||| |||||||| || |
|
|
| T |
54342 |
tcatcaagatcgagttattatatgaaattagaacacacttacttgaaaaccatgatcacag-attcgccgagatttgagacaagagtgtcttccttttcc |
54440 |
T |
|
| Q |
137 |
tttcacatactctggaacttacggttttcgatggggcaaaccactaatgagcag-atagttagag |
200 |
Q |
| |
|
|||||||| ||| |||||||| ||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
54441 |
tttcacatgctccggaacttagggttttcgatggggcaaaccattaatgagcagaatagttagag |
54505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 137; Significance: 3e-71; HSPs: 3)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 242 - 579
Target Start/End: Complemental strand, 12439 - 12105
Alignment:
| Q |
242 |
aagtacctagatcatcaaactttaagaaagatataatatttactttgattaatttctcaggcatcattttccaataaatatgatccaagtgtttatgcca |
341 |
Q |
| |
|
|||||| ||||||||||||||||||||||| || ||| ||||||||||||||||||||| | || | |||||||||||||||||| || |||||||| |
|
|
| T |
12439 |
aagtacttagatcatcaaactttaagaaaggtagaatgtttactttgattaatttctcatccctc--tccccaataaatatgatccaaatgcttatgcca |
12342 |
T |
|
| Q |
342 |
taaagtaaagaatatctttctcaacattagactttatagcaacaaaaattttgacaacgaatgacgaagcaaggttatgtgaagtcaaagacaacttata |
441 |
Q |
| |
|
| || ||||| || | || ||||||||||||| |||||||||||| | |||||||||| || ||| || |||||||||||||||||||||| || ||||| |
|
|
| T |
12341 |
tgaattaaaggatgtattcctcaacattagaccttatagcaacaacagttttgacaacaaaagacaaaacaaggttatgtgaagtcaaagaaaaattata |
12242 |
T |
|
| Q |
442 |
caaaccatcaataaaagatccagggagtcatgaaccatctactagagataatttatatagatgaacaaaggataaagtaaggttatgtgagtgcaa-ctc |
540 |
Q |
| |
|
||| |||||| ||||||||||||||||||| |||||| || ||||| ||||||||||||||||||||||| ||| |||||||||||||| || ||| |
|
|
| T |
12241 |
taaatcatcaacaaaagatccagggagtcattaaccatatagcagagaccatttatatagatgaacaaaggatgaagaaaggttatgtgagtttaatctc |
12142 |
T |
|
| Q |
541 |
aaacttagtttcatacctcaaagagtaaaactaaaacaa |
579 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||| |
|
|
| T |
12141 |
aaacttagttttctacctc--ctagtaaaactaaaacaa |
12105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 37 - 189
Target Start/End: Complemental strand, 14010 - 13856
Alignment:
| Q |
37 |
aatcattaagattgaattattatatgaaattagaacgcacttacttgaaaaccatgattaccggattcgctgagatttcggacaagagtcttcctttgcc |
136 |
Q |
| |
|
|||||| ||||| || |||||||||||||||||||| |||||||||| ||| |||| | ||||||||||| | |||| ||||| |||||| ||||||| |
|
|
| T |
14010 |
aatcatcaagatcgagttattatatgaaattagaacacacttacttggaaatcatggtgaccggattcgccgggattgaagacaa-agtctttctttgcc |
13912 |
T |
|
| Q |
137 |
tttcacatactctgga---acttacggttttcgatggggcaaaccactaatgagca |
189 |
Q |
| |
|
|||||||||||| | | ||| || |||| ||||||||||||||||||||||| |
|
|
| T |
13911 |
tttcacatactccaaacttaattagggatttcaatggggcaaaccactaatgagca |
13856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 6213 - 6146
Alignment:
| Q |
123 |
agtcttcctttgcctttcacatactctggaacttacggttttcgatggggcaaaccactaatgagcaga |
191 |
Q |
| |
|
|||||||||||| ||||||||||||| || ||| ||||||| | |||||||| |||||||||||||| |
|
|
| T |
6213 |
agtcttcctttgtctttcacatactc-caaatttagggttttcaacggggcaaaacactaatgagcaga |
6146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 1e-61; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 225 - 486
Target Start/End: Complemental strand, 16689886 - 16689622
Alignment:
| Q |
225 |
tctaatgcaatcaacacaagtacctagatcatcaaactttaagaaagatataatatttactttgattaatttctcaggcatcattttccaataaatatga |
324 |
Q |
| |
|
|||||||||||| ||| ||||| ||||||||||||| |||||||||| || |||||||| |||||||||||||||| | | || ||||||||||||| |
|
|
| T |
16689886 |
tctaatgcaatccacataagtatctagatcatcaaattttaagaaaggtagaatatttattttgattaatttctcatccct---ttcccaataaatatga |
16689790 |
T |
|
| Q |
325 |
tccaagtgtttatgccataaagtaaagaatatctttctcaacattagac-------tttatagcaacaaaaattttgacaacgaatgacgaagcaaggtt |
417 |
Q |
| |
|
|||||||| |||||||||||||||||| || |||| |||||||||||| | ||||| ||||||| ||||||||| || || ||| ||||||| |
|
|
| T |
16689789 |
tccaagtgcttatgccataaagtaaaggatgtcttcctcaacattagatcatatagtatatagtaacaaaa-ttttgacaattaaagatgaatcaaggtt |
16689691 |
T |
|
| Q |
418 |
atgtgaagtcaaagacaacttatacaaaccatcaataaaagatccagggagtcatgaaccatctactag |
486 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
16689690 |
atgtgaagtcaaagacaacttatacaaatcatcaacaaaagatccagggagtcatgaaccatctactag |
16689622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 375 - 579
Target Start/End: Complemental strand, 15379504 - 15379299
Alignment:
| Q |
375 |
ttatagcaacaaaaattttgacaacgaatgacgaagcaaggttatgtgaagtcaaagacaacttatacaaaccatcaataaaagatccagggagtcatga |
474 |
Q |
| |
|
||||||||||||||| |||||||||||| || ||| ||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
15379504 |
ttatagcaacaaaaaatttgacaacgaaagatgaatcaaggatatgtgaagtcaaagacaacttatacaaaccatcaacaaaagatctagggagtcatga |
15379405 |
T |
|
| Q |
475 |
accatctactagagataatttatatagatgaacaaaggataaagtaaggttatgtgagtgcaa-ctcaaacttagtttcatacctcaaagagtaaaacta |
573 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||| ||| || || |||||||| || || ||||||||||| |||||| ||||||||||||| |
|
|
| T |
15379404 |
accatctactagagacaatttatatagatgaacaaccgatgaagcaaagtcatgtgagtttaatctaaaacttagttttctacctccaagagtaaaacta |
15379305 |
T |
|
| Q |
574 |
aaacaa |
579 |
Q |
| |
|
|||||| |
|
|
| T |
15379304 |
aaacaa |
15379299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 390 - 579
Target Start/End: Complemental strand, 16689621 - 16689431
Alignment:
| Q |
390 |
ttttgacaacgaatgacgaagcaaggttatgtgaagtcaaagacaacttatacaaaccatcaataaaagatccagggagtcatgaaccatctactagaga |
489 |
Q |
| |
|
||||||||| ||| || || ||||||||||||||||||||||||||||||||||| |||||| |||| ||| ||||||| ||||||||||||||||||| |
|
|
| T |
16689621 |
ttttgacaatgaaagataaatcaaggttatgtgaagtcaaagacaacttatacaaatcatcaacaaaaaatcgagggagtgatgaaccatctactagaga |
16689522 |
T |
|
| Q |
490 |
taatttatatagatgaacaaaggataaagtaaggttatgtgagtgcaa-ctcaaacttagtttcatacctcaaagagtaaaactaaaacaa |
579 |
Q |
| |
|
| |||||||||||||||||||||| ||| |||||||||||||| || |||||||||||||| |||||| ||||| ||||||||||||| |
|
|
| T |
16689521 |
cagtttatatagatgaacaaaggatgaagcaaggttatgtgagtttaatctcaaacttagttttctacctccaagaggaaaactaaaacaa |
16689431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 53 - 179
Target Start/End: Complemental strand, 16663406 - 16663281
Alignment:
| Q |
53 |
ttattatatgaaattagaacgcacttacttgaaaaccatgattaccggattcgctgagatttcggacaagagtcttcctttgcctttcacatactctgga |
152 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||| || | | |
|
|
| T |
16663406 |
ttattatatgaaattagaacacacttacttgtaaaccatgattactggattcgccgagatttgagacaagagtcttcctttgcctttcacatgct-tcgg |
16663308 |
T |
|
| Q |
153 |
acttacggttttcgatggggcaaacca |
179 |
Q |
| |
|
||||| ||||||| ||||||||||||| |
|
|
| T |
16663307 |
acttagggttttcaatggggcaaacca |
16663281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 53 - 191
Target Start/End: Complemental strand, 16691309 - 16691172
Alignment:
| Q |
53 |
ttattatatgaaattagaacgcacttacttgaaaaccatgattaccggattcgctgagatttcggacaagagtcttcctttgcctttcacatactctgga |
152 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||||||| | |||| || | |||||||||||| |||||||||| ||| | |
|
|
| T |
16691309 |
ttattatatgaaattagaacacacttacttgtaaaccatgattaccggattcgccaatatttgagaaatgagtcttcctttacctttcacatgctccag- |
16691211 |
T |
|
| Q |
153 |
acttacggttttcgatggggcaaaccactaatgagcaga |
191 |
Q |
| |
|
||||| | ||||| | ||| |||||||||||||||||| |
|
|
| T |
16691210 |
acttaggattttcaacgggaaaaaccactaatgagcaga |
16691172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 233 - 300
Target Start/End: Complemental strand, 15379622 - 15379555
Alignment:
| Q |
233 |
aatcaacacaagtacctagatcatcaaactttaagaaagatataatatttactttgattaatttctca |
300 |
Q |
| |
|
|||| ||| ||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
15379622 |
aatccacataagtatctagatcatcaaactttaagaaaggtataatatttattttgattaatttctca |
15379555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 225 - 452
Target Start/End: Original strand, 18426090 - 18426317
Alignment:
| Q |
225 |
tctaatgcaatcaacacaagtacctagatcatcaaactttaagaaagatataatatttactttgattaatttctcaggcatcattttc-caataaatatg |
323 |
Q |
| |
|
|||||||||||| |||||||||| | ||||||||||||||||||||| || |||||||||||||||||||||||| ||| | ||| | ||| ||||||| |
|
|
| T |
18426090 |
tctaatgcaatccacacaagtacatggatcatcaaactttaagaaaggtaaaatatttactttgattaatttctc-ggc--cctttccacaacaaatatg |
18426186 |
T |
|
| Q |
324 |
atccaagtgtttatgccataaagtaaagaatatctttctcaacattagactttatagcaacaaaaattt---tgacaacgaatgacgaagcaaggttatg |
420 |
Q |
| |
|
||||||||| |||||||||||||||| || | |||| ||||| ||||||| ||||||||||||||| ||||||| || ||||||||||||||||| |
|
|
| T |
18426187 |
atccaagtgcttatgccataaagtaagga-tgtcttcctcaatattagaccttatagcaacaaaaaaaaaaatgacaacaaaagacgaagcaaggttatg |
18426285 |
T |
|
| Q |
421 |
tgaagtcaaagacaacttatacaaaccatcaa |
452 |
Q |
| |
|
|||||| |||||||||||||| |||||||||| |
|
|
| T |
18426286 |
tgaagtaaaagacaacttatataaaccatcaa |
18426317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 53 - 188
Target Start/End: Complemental strand, 32638368 - 32638230
Alignment:
| Q |
53 |
ttattatatgaaattagaacgcacttacttga--aaaccatgatta-ccgga-ttcgctgagatttcggacaagagtcttcctttgcctttcacatactc |
148 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||| ||||| ||||| ||||||| || | ||||||||||||||||||||||| ||| |
|
|
| T |
32638368 |
ttattatatgaaattagaacacacttacttgatgaaaccatgattatccggacttcgccgagatttgagataggagtcttcctttgcctttcacatgctc |
32638269 |
T |
|
| Q |
149 |
tggaacttacggttttcgatggggcaaaccactaatgagc |
188 |
Q |
| |
|
| |||| ||||||| |||||||||||||||||||||| |
|
|
| T |
32638268 |
-caaccttagggttttcaatggggcaaaccactaatgagc |
32638230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 18424180 - 18424246
Alignment:
| Q |
123 |
agtcttcctttgcctttcacatactctggaactt-acggttttcgatggggcaaaccactaatgagca |
189 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||| | |||||||||||||||||||| |||||||||| |
|
|
| T |
18424180 |
agtcttcctttgcctttcacatgctc-caaacttaagggttttcgatggggcaaaccgctaatgagca |
18424246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 35 - 189
Target Start/End: Original strand, 11569184 - 11569337
Alignment:
| Q |
35 |
ttaatcattaagattgaattattatatgaaattagaacgcacttacttgaaaaccatgattaccggattcgctgagatttcggacaagagtcttcctttg |
134 |
Q |
| |
|
|||||||| ||||| || |||||||||||||||||||| ||||||||| ||||| |||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
11569184 |
ttaatcataaagatcgagttattatatgaaattagaacacacttactttgaaaccttgattaccggattcgccgagatttgagacaagagtcttcctttg |
11569283 |
T |
|
| Q |
135 |
cctttcacatactctggaacttacggttttcgatggggcaaaccactaatgagca |
189 |
Q |
| |
|
|||||||||| ||| || |||| | ||||||||||||||||||||||||||||| |
|
|
| T |
11569284 |
cctttcacatgctccgg-acttgggattttcgatggggcaaaccactaatgagca |
11569337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 35 - 191
Target Start/End: Original strand, 32184815 - 32184969
Alignment:
| Q |
35 |
ttaatcattaagattgaattattatatgaaattagaacgcacttacttgaaaaccatgattaccggattcgctgagatttcggacaagagtcttcctttg |
134 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||| | ||||| |||| |||||||| ||| | |||||| ||||||| |||||| |||||||||||| |
|
|
| T |
32184815 |
ttaatcatcaagattcaattattatatgaaattagtgcacacttgcttggaaaccatgtttatcaaattcgccgagatttgggacaa-agtcttcctttg |
32184913 |
T |
|
| Q |
135 |
cctttcacatactctggaacttacggttttcgatggggcaaaccactaatgagcaga |
191 |
Q |
| |
|
|||||||||| ||| | |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32184914 |
cctttcacatgctccg-aacttagggttttcgatggggcaaaccactaatgagcaga |
32184969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 437 - 576
Target Start/End: Complemental strand, 30178504 - 30178364
Alignment:
| Q |
437 |
ttatacaaaccatcaataaaagatccagggagtcatgaaccatctactagagataatttatatagatgaacaaaggataaagtaaggttatgtgagtgca |
536 |
Q |
| |
|
||||| |||||||||| ||||||||| ||||| ||||||||||| | || || ||||||||||| |||||||||| || || ||||||| ||| || |
|
|
| T |
30178504 |
ttatataaaccatcaacaaaagatcctgggagccatgaaccatcaaataaagtctgtttatatagatcaacaaaggatgaaacaaagttatgtaagttca |
30178405 |
T |
|
| Q |
537 |
ac-tcaaacttagtttcatacctcaaagagtaaaactaaaa |
576 |
Q |
| |
|
|| ||| |||||||||| |||||| |||||||||||||||| |
|
|
| T |
30178404 |
acctcagacttagtttcctacctccaagagtaaaactaaaa |
30178364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 32142333 - 32142365
Alignment:
| Q |
53 |
ttattatatgaaattagaacgcacttacttgaa |
85 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
32142333 |
ttattatatgaaattagaacacacttacttgaa |
32142365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 32142451 - 32142491
Alignment:
| Q |
151 |
gaacttacggttttcgatggggcaaaccactaatgagcaga |
191 |
Q |
| |
|
||||||| ||||||| |||||| |||||||||||||||||| |
|
|
| T |
32142451 |
gaacttagggttttcaatggggtaaaccactaatgagcaga |
32142491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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