View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12682_low_30 (Length: 233)

Name: NF12682_low_30
Description: NF12682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12682_low_30
NF12682_low_30
[»] chr7 (3 HSPs)
chr7 (19-218)||(5938516-5938715)
chr7 (153-219)||(7133228-7133294)
chr7 (173-219)||(23930262-23930308)
[»] chr8 (3 HSPs)
chr8 (161-209)||(14513132-14513180)
chr8 (153-209)||(14659651-14659707)
chr8 (139-215)||(29510235-29510310)
[»] chr4 (6 HSPs)
chr4 (139-218)||(24343551-24343630)
chr4 (152-209)||(31243491-31243548)
chr4 (139-218)||(944604-944683)
chr4 (154-209)||(10133756-10133811)
chr4 (173-215)||(7012119-7012161)
chr4 (167-209)||(20743236-20743278)
[»] chr5 (3 HSPs)
chr5 (161-209)||(2419914-2419962)
chr5 (176-219)||(43554564-43554607)
chr5 (161-219)||(26205718-26205776)
[»] chr3 (1 HSPs)
chr3 (152-219)||(25074832-25074899)
[»] chr1 (3 HSPs)
chr1 (176-219)||(42004920-42004963)
chr1 (139-203)||(20157286-20157350)
chr1 (168-216)||(32899931-32899979)
[»] chr2 (1 HSPs)
chr2 (139-215)||(37419796-37419871)


Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 5938715 - 5938516
Alignment:
Q  19 agtatttgtttgcttctagtgtttcctgttttcagccactcacatacacagtaaaaactgaaagggttgtttaaaaataaacagacttttgattctttta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5938715 agtatttgtttgcttctagtgtttcctgttttcagccactcacatacacagtaaaaactgaaagggttgtttaaaaataaacagacttttgattctttta 5938616  T
Q  119 tttgatttttatgaatttgaatgaagcatagaaactcctcatattacgtgtgttccggtgtcggacacgcatcggtgtctgacaccgacacaacacctat 218  Q
    |||||||||||||||||||||| ||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5938615 tttgatttttatgaatttgaataaagcagagaaactcctcagattaggtgtgttccggtgtcggacacgcatcggtgtctgacaccgacacaacacctat 5938516  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 219
Target Start/End: Original strand, 7133228 - 7133294
Alignment:
Q  153 ctcctcatattacgtgtgttccggtgtcggacacgcatcggtgtctgacaccgacacaacacctatg 219  Q
    ||||||| |||| |||||| || ||||||||||||| |||||||| |||||||||||| ||||||||    
T  7133228 ctcctcagattaggtgtgtcccagtgtcggacacgcgtcggtgtccgacaccgacacaccacctatg 7133294  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 23930308 - 23930262
Alignment:
Q  173 ccggtgtcggacacgcatcggtgtctgacaccgacacaacacctatg 219  Q
    |||||||||||||||||||||| || |||||||||||||||||||||    
T  23930308 ccggtgtcggacacgcatcggtatccgacaccgacacaacacctatg 23930262  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 14513132 - 14513180
Alignment:
Q  161 attacgtgtgttccggtgtcggacacgcatcggtgtctgacaccgacac 209  Q
    |||| |||||||||||||||||||| || ||||||||||||||||||||    
T  14513132 attaggtgtgttccggtgtcggacatgcgtcggtgtctgacaccgacac 14513180  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 14659651 - 14659707
Alignment:
Q  153 ctcctcatattacgtgtgttccggtgtcggacacgcatcggtgtctgacaccgacac 209  Q
    ||||||| |||| ||||||  |||||| |||||||| | ||||||||||||||||||    
T  14659651 ctcctcagattaggtgtgtctcggtgttggacacgcgttggtgtctgacaccgacac 14659707  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 29510235 - 29510310
Alignment:
Q  139 atgaagcatagaaactcctcatattacgtgtgttccggtgtcggacacgcatcggtgtctgacaccgacacaacacc 215  Q
    ||||||||  || |||||||  |||| |||||| |||||||||||||||| || ||||| ||||||||||| |||||    
T  29510235 atgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacgcgtc-gtgtccgacaccgacactacacc 29510310  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 24343630 - 24343551
Alignment:
Q  139 atgaagcatagaaactcctcatattacgtgtgttccggtgtcggacacgcatcggtgtctgacaccgacacaacacctat 218  Q
    ||||||||  || |||||||| | || | |||| |||||||||||||||| |||||||| ||||||||||| ||||||||    
T  24343630 atgaagcacggacactcctcagaataggcgtgtcccggtgtcggacacgcgtcggtgtcggacaccgacacgacacctat 24343551  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 31243491 - 31243548
Alignment:
Q  152 actcctcatattacgtgtgttccggtgtcggacacgcatcggtgtctgacaccgacac 209  Q
    ||||||||||||| |||||| | ||||||| ||||||||||||||| |||||| ||||    
T  31243491 actcctcatattaggtgtgtcctggtgtcgaacacgcatcggtgtccgacaccaacac 31243548  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 944604 - 944683
Alignment:
Q  139 atgaagcatagaaactcctcatattacgtgtgttccggtgtcggacacgcatcggtgtctgacaccgacacaacacctat 218  Q
    |||||||  ||| |||||||| |||| |||||| |||||||||||||||| || ||||  ||||| ||||| ||||||||    
T  944604 atgaagctcagagactcctcagattaggtgtgtcccggtgtcggacacgcgtctgtgttcgacactgacacgacacctat 944683  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 10133811 - 10133756
Alignment:
Q  154 tcctcatattacgtgtgttccggtgtcggacacgcatcggtgtctgacaccgacac 209  Q
    |||||| |||| |||||| | |||||||||||||| || |||||||||||||||||    
T  10133811 tcctcagattaggtgtgtcctggtgtcggacacgcgtcagtgtctgacaccgacac 10133756  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 215
Target Start/End: Complemental strand, 7012161 - 7012119
Alignment:
Q  173 ccggtgtcggacacgcatcggtgtctgacaccgacacaacacc 215  Q
    ||||||||||| |||| |||||||| |||||||||||||||||    
T  7012161 ccggtgtcggatacgcgtcggtgtccgacaccgacacaacacc 7012119  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 20743236 - 20743278
Alignment:
Q  167 tgtgttccggtgtcggacacgcatcggtgtctgacaccgacac 209  Q
    |||||||||||||||||||||  ||||||||||||| ||||||    
T  20743236 tgtgttccggtgtcggacacgtgtcggtgtctgacatcgacac 20743278  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 2419962 - 2419914
Alignment:
Q  161 attacgtgtgttccggtgtcggacacgcatcggtgtctgacaccgacac 209  Q
    |||| |||||| |||| ||||||||||||||||||||||||||| ||||    
T  2419962 attaggtgtgtcccggggtcggacacgcatcggtgtctgacaccaacac 2419914  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 43554607 - 43554564
Alignment:
Q  176 gtgtcggacacgcatcggtgtctgacaccgacacaacacctatg 219  Q
    ||||||||||||| |||||||| ||||||||||| |||||||||    
T  43554607 gtgtcggacacgcgtcggtgtccgacaccgacacgacacctatg 43554564  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 26205718 - 26205776
Alignment:
Q  161 attacgtgtgttccggtgtcggacacgcatcggtgtctgacaccgacacaacacctatg 219  Q
    ||||||||||| ||||||||||| |||| | |||||| |||||| |||| |||||||||    
T  26205718 attacgtgtgtcccggtgtcggatacgcgttggtgtccgacaccaacacgacacctatg 26205776  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 219
Target Start/End: Complemental strand, 25074899 - 25074832
Alignment:
Q  152 actcctcatattacgtgtgttccggtgtcggacacgcatcggtgtctgacaccgacacaacacctatg 219  Q
    |||||||  |||| |||||| || ||||||||||||| | |||||| |||||||||||||| ||||||    
T  25074899 actcctcggattaggtgtgtcccagtgtcggacacgcgttggtgtcagacaccgacacaacgcctatg 25074832  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 42004920 - 42004963
Alignment:
Q  176 gtgtcggacacgcatcggtgtctgacaccgacacaacacctatg 219  Q
    |||||||||| || |||||||| |||||||||||||||||||||    
T  42004920 gtgtcggacatgcgtcggtgtccgacaccgacacaacacctatg 42004963  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 20157286 - 20157350
Alignment:
Q  139 atgaagcatagaaactcctcatattacgtgtgttccggtgtcggacacgcatcggtgtctgacac 203  Q
    ||||||||  || |||||||| |||| ||||||  ||||||||||||||| |||||||| |||||    
T  20157286 atgaagcacggatactcctcaaattaggtgtgtctcggtgtcggacacgcgtcggtgtcggacac 20157350  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 32899979 - 32899931
Alignment:
Q  168 gtgttccggtgtcggacacgcatcggtgtctgacaccgacacaacacct 216  Q
    |||| |||||||| |||| || |||||||| ||||||||||||||||||    
T  32899979 gtgtcccggtgtccgacatgcgtcggtgtccgacaccgacacaacacct 32899931  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 37419871 - 37419796
Alignment:
Q  139 atgaagcatagaaactcctcatattacgtgtgttccggtgtcggacacgcatcggtgtctgacaccgacacaacacc 215  Q
    ||||||||  || |||||||  |||| | |||| ||||||||||||||||||| ||||| ||||||||||| |||||    
T  37419871 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgcatc-gtgtccgacaccgacacgacacc 37419796  T

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