View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12682_low_31 (Length: 202)

Name: NF12682_low_31
Description: NF12682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12682_low_31
NF12682_low_31
[»] chr2 (3 HSPs)
chr2 (22-189)||(32785611-32785777)
chr2 (40-152)||(1037536-1037651)
chr2 (88-152)||(44575471-44575535)
[»] chr8 (2 HSPs)
chr8 (56-150)||(32151429-32151523)
chr8 (59-152)||(18315145-18315241)
[»] chr4 (11 HSPs)
chr4 (50-152)||(1600541-1600646)
chr4 (40-152)||(55908600-55908715)
chr4 (96-152)||(12121329-12121385)
chr4 (86-152)||(8186963-8187029)
chr4 (59-152)||(1548298-1548391)
chr4 (50-115)||(1552676-1552741)
chr4 (96-152)||(1489233-1489289)
chr4 (59-152)||(7225755-7225851)
chr4 (60-138)||(558630-558711)
chr4 (86-132)||(532344-532390)
chr4 (96-152)||(1504983-1505039)
[»] scaffold0295 (1 HSPs)
scaffold0295 (40-152)||(496-611)
[»] chr6 (2 HSPs)
chr6 (40-152)||(7119269-7119381)
chr6 (40-152)||(7131747-7131859)
[»] chr3 (2 HSPs)
chr3 (48-150)||(514602-514707)
chr3 (56-150)||(1657375-1657472)
[»] chr5 (1 HSPs)
chr5 (59-152)||(32267603-32267699)
[»] chr1 (2 HSPs)
chr1 (59-152)||(9581199-9581295)
chr1 (59-152)||(9586767-9586863)


Alignment Details
Target: chr2 (Bit Score: 134; Significance: 6e-70; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 22 - 189
Target Start/End: Complemental strand, 32785777 - 32785611
Alignment:
Q  22 cattcgagggtgctcgattcttgaaaagtgggccaaattcaaatgtctaatcttagaacatcttaaaaattgacaaataccttcttcagatatgttatag 121  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32785777 cattcgacggtgctcgattcttgaaaagtggtccaaattcaaatgtctaatcttagaacatcttaaaaattgacaaataccttcttcagatatgttatag 32785678  T
Q  122 caatagctcaaatcaagtagttgcaaattggnnnnnnntagaagaaaacatcctgatgctttcatctc 189  Q
    |||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  32785677 caatagctcaaatcaagtagttgcaaattgg-aaaaaatagaagaaaacatcctgatgctttcatctc 32785611  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 40 - 152
Target Start/End: Complemental strand, 1037651 - 1037536
Alignment:
Q  40 tcttgaaaagtgggccaaattcaaatgtctaatcttagaacatct---taaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatca 136  Q
    ||||||| ||| ||| |||||||||||||||| |||| |||||||   ||||| || |||||||||||||||||||||||||| |||  |||||||||||    
T  1037651 tcttgaatagtaggctaaattcaaatgtctaaccttacaacatctccttaaaacttcacaaataccttcttcagatatgttatggcaggagctcaaatca 1037552  T
Q  137 agtagttgcaaattgg 152  Q
    || | |||||||||||    
T  1037551 agaaattgcaaattgg 1037536  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 44575535 - 44575471
Alignment:
Q  88 aaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattgg 152  Q
    ||||| ||||||| |||||   ||||||| ||||||| ||||||||||||||| |||||||||||    
T  44575535 aaattcacaaatatcttctatggatatgtaatagcaaaagctcaaatcaagtaattgcaaattgg 44575471  T

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Target: chr8 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 56 - 150
Target Start/End: Original strand, 32151429 - 32151523
Alignment:
Q  56 aaattcaaatgtctaatcttagaacatcttaaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaatt 150  Q
    ||||||||||| ||||||| ||| |||||||||| ||||||||| ||||||||||||||||||| |||| | ||||||||||| |||||||||||    
T  32151429 aaattcaaatgcctaatctcagagcatcttaaaacttgacaaattccttcttcagatatgttatggcaacacctcaaatcaagcagttgcaaatt 32151523  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 152
Target Start/End: Complemental strand, 18315241 - 18315145
Alignment:
Q  59 ttcaaatgtctaatcttagaacatctt---aaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattgg 152  Q
    ||||| |||||||||| |||||| |||   |||| |||||||||||||||||||| |||||||| ||| |||||||||||||| |  ||||||||||    
T  18315241 ttcaactgtctaatctcagaacaacttcgtaaaacttgacaaataccttcttcaggtatgttatcgcagtagctcaaatcaagcaactgcaaattgg 18315145  T

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Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 50 - 152
Target Start/End: Original strand, 1600541 - 1600646
Alignment:
Q  50 tgggccaaattcaaatgtctaatcttagaacatct---taaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgca 146  Q
    ||||| || |||||||||||||| |||||| ||||   ||||| ||||||||||||||||||||||||||||  ||||  |||||||||||| |||||||    
T  1600541 tgggctaagttcaaatgtctaattttagaaaatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgca 1600640  T
Q  147 aattgg 152  Q
    ||||||    
T  1600641 aattgg 1600646  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 40 - 152
Target Start/End: Complemental strand, 55908715 - 55908600
Alignment:
Q  40 tcttgaaaagtgggccaaattcaaatgtctaatcttagaacatct---taaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatca 136  Q
    ||||||| ||| ||| |||||||||||||||| |||| |||||||   || || || |||||||||||||||||||||||||| |||  |||||||||||    
T  55908715 tcttgaacagtaggctaaattcaaatgtctaaccttacaacatctccttagaacttcacaaataccttcttcagatatgttatggcaggagctcaaatca 55908616  T
Q  137 agtagttgcaaattgg 152  Q
    || | |||||||||||    
T  55908615 agaaattgcaaattgg 55908600  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 12121385 - 12121329
Alignment:
Q  96 aaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattgg 152  Q
    ||||||||||||||||||||||||||||| | ||||||||||| | |||||||||||    
T  12121385 aaataccttcttcagatatgttatagcaaaaactcaaatcaagcaattgcaaattgg 12121329  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 8187029 - 8186963
Alignment:
Q  86 aaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattgg 152  Q
    |||| |||||||||||||||||||||||||| ||||||||  ||||||||||| |  ||||||||||    
T  8187029 aaaacttgacaaataccttcttcagatatgtcatagcaatgactcaaatcaagcaactgcaaattgg 8186963  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 152
Target Start/End: Complemental strand, 1548391 - 1548298
Alignment:
Q  59 ttcaaatgtctaatcttagaacatcttaaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattgg 152  Q
    ||||| |||||||||||| |||||||||||| || |||||||||||| || ||||||  |  |||||   |||||||||| |||||||||||||    
T  1548391 ttcaactgtctaatcttacaacatcttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattgg 1548298  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 1552741 - 1552676
Alignment:
Q  50 tgggccaaattcaaatgtctaatcttagaacatcttaaaaattgacaaataccttcttcagatatg 115  Q
    ||||| || |||||||||||||||||| |||||||||||| || |||||||||||| || ||||||    
T  1552741 tgggctaagttcaaatgtctaatcttacaacatcttaaaacttcacaaataccttcgtctgatatg 1552676  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 1489289 - 1489233
Alignment:
Q  96 aaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattgg 152  Q
    |||||||||||||||||||||||||||||||  |||||| ||| | |||||||||||    
T  1489289 aaataccttcttcagatatgttatagcaataagtcaaattaagcaattgcaaattgg 1489233  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 59 - 152
Target Start/End: Complemental strand, 7225851 - 7225755
Alignment:
Q  59 ttcaaatgtctaatcttagaacatct---taaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattgg 152  Q
    |||||||||||||||||| |||||||   ||||| ||||||||  ||||||||| | ||||||| | || ||||||||||||| || | ||||||||    
T  7225851 ttcaaatgtctaatcttacaacatctccgtaaaacttgacaaaccccttcttcatacatgttatgggaagagctcaaatcaagcagctccaaattgg 7225755  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 138
Target Start/End: Original strand, 558630 - 558711
Alignment:
Q  60 tcaaatgtctaatcttagaacat---cttaaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaag 138  Q
    ||||||||||||| |||||||||   |||||||  ||||||||||||| ||| ||||| ||||  |||||| ||||||||||    
T  558630 tcaaatgtctaatgttagaacatgtccttaaaacatgacaaatacctttttctgatattttatgacaatagatcaaatcaag 558711  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 132
Target Start/End: Original strand, 532344 - 532390
Alignment:
Q  86 aaaaattgacaaataccttcttcagatatgttatagcaatagctcaa 132  Q
    |||| |||| |||||||||||| |||||||||||| |||||||||||    
T  532344 aaaacttgataaataccttctttagatatgttataacaatagctcaa 532390  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 1505039 - 1504983
Alignment:
Q  96 aaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattgg 152  Q
    |||||||||||||||||||||||| |||||| || |||| ||  | |||||||||||    
T  1505039 aaataccttcttcagatatgttatggcaataactaaaattaaccaattgcaaattgg 1504983  T

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Target: scaffold0295 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 40 - 152
Target Start/End: Complemental strand, 611 - 496
Alignment:
Q  40 tcttgaaaagtgggccaaattcaaatgtctaatcttagaacatct---taaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatca 136  Q
    ||||||| ||| ||| |||||||||||||||  |||| |||||||   || || || |||||||||||||||||||||||||| |||  |||||||||||    
T  611 tcttgaacagtaggctaaattcaaatgtctagccttacaacatctccttagaacttcacaaataccttcttcagatatgttatggcaggagctcaaatca 512  T
Q  137 agtagttgcaaattgg 152  Q
    || | ||| |||||||    
T  511 agaaattgtaaattgg 496  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 40 - 152
Target Start/End: Original strand, 7119269 - 7119381
Alignment:
Q  40 tcttgaaaagtgggccaaattcaaatgtctaatcttagaacat---cttaaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatca 136  Q
    ||||||| ||||||| || ||||||||| ||||||||||||||   ||||||| |||||||||||   ||||||||||||||| ||||    ||||||||    
T  7119269 tcttgaacagtgggctaagttcaaatgtttaatcttagaacatctccttaaaacttgacaaatac---cttcagatatgttattgcaagtattcaaatca 7119365  T
Q  137 agtagttgcaaattgg 152  Q
    || ||||| |||||||    
T  7119366 agaagttgtaaattgg 7119381  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 40 - 152
Target Start/End: Original strand, 7131747 - 7131859
Alignment:
Q  40 tcttgaaaagtgggccaaattcaaatgtctaatcttagaacat---cttaaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatca 136  Q
    ||||||| ||||||| || ||||||||| ||||||||||||||   ||||||| |||||||||||   ||||||||||||||| ||||    ||||||||    
T  7131747 tcttgaacagtgggctaagttcaaatgtttaatcttagaacatctccttaaaacttgacaaatac---cttcagatatgttattgcaagtattcaaatca 7131843  T
Q  137 agtagttgcaaattgg 152  Q
    || ||||| |||||||    
T  7131844 agaagttgtaaattgg 7131859  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 48 - 150
Target Start/End: Complemental strand, 514707 - 514602
Alignment:
Q  48 agtgggccaaattcaaatgtctaatcttagaacatct---taaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttg 144  Q
    ||||||| || |||||||| ||||||||||| |||||   ||||| |||||| |||| ||  |||||||||||||  |||||||||||||||| ||| ||    
T  514707 agtgggctaagttcaaatgcctaatcttagaccatctctttaaaacttgacagatacttttgtcagatatgttatcacaatagctcaaatcaattagctg 514608  T
Q  145 caaatt 150  Q
    ||||||    
T  514607 caaatt 514602  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 150
Target Start/End: Original strand, 1657375 - 1657472
Alignment:
Q  56 aaattcaaatgtctaatcttagaacatct---taaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaatt 150  Q
    ||||||||||||||||| ||| ||||| |   |||||  |||  ||||||||||||||||||||  | ||||| ||||||||||||||| || |||||    
T  1657375 aaattcaaatgtctaatgttacaacatatcattaaaacatgaacaataccttcttcagatatgtctttgcaatggctcaaatcaagtagctgtaaatt 1657472  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 59 - 152
Target Start/End: Original strand, 32267603 - 32267699
Alignment:
Q  59 ttcaaatgtctaatcttagaacat---cttaaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattgg 152  Q
    |||||||||||||| ||| |||||   ||||||||||||   ||||||||||||||||||  | | |||| |||||||||||| || ||||||||||    
T  32267603 ttcaaatgtctaatgttacaacatatccttaaaaattgaacgataccttcttcagatatgcgacaacaattgctcaaatcaagcagctgcaaattgg 32267699  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 59 - 152
Target Start/End: Original strand, 9581199 - 9581295
Alignment:
Q  59 ttcaaatgtctaatcttagaacatctt---aaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattgg 152  Q
    |||||||||||||||| | ||||||||   |||| |||||||||||||  || |||||||||| |||||| || || |||||| || ||||||||||    
T  9581199 ttcaaatgtctaatctgacaacatctttttaaaacttgacaaatacctcttttagatatgttacagcaatggcgcagatcaagcagctgcaaattgg 9581295  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 59 - 152
Target Start/End: Original strand, 9586767 - 9586863
Alignment:
Q  59 ttcaaatgtctaatcttagaacatctt---aaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattgg 152  Q
    |||||||||||||||| | ||||||||   |||| |||||||||||||  || |||||||||| |||||| || || |||||| || ||||||||||    
T  9586767 ttcaaatgtctaatctgacaacatctttgtaaaacttgacaaatacctcttttagatatgttacagcaatggcacagatcaagcagctgcaaattgg 9586863  T

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