View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12682_low_4 (Length: 517)
Name: NF12682_low_4
Description: NF12682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12682_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 14 - 499
Target Start/End: Original strand, 35902208 - 35902697
Alignment:
| Q |
14 |
cataggtacataatcaaaatgataaaatacaaataatattacatataatacacaaaacaggatgggtgaacttgatttctctgccttc----acatcaga |
109 |
Q |
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| T |
35902208 |
cataggtacataatcaaaatgataaaatacaaataatattacatataatacacaaaacaggatgggtaaacttgatttctctgccttcttatacatcaga |
35902307 |
T |
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| Q |
110 |
gttctacatgataccacatacaataatctatttaagtactgtatacttacaaaacagtcctcaaagtttgtattgcaatctagaatagaatagtactcta |
209 |
Q |
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| T |
35902308 |
gttctacatgatactacatacaataatctatttaagtactgtatacttacaaaacagtcctcaaagtttgtattgcaatctagaatagaatggtactcta |
35902407 |
T |
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| Q |
210 |
gcttccttgaagttgaagcaaaaagctcctttcctacaacaaaataacggcctcaagtagttctacttccttttatcttctattgctattttcctttcta |
309 |
Q |
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| T |
35902408 |
gcttccttgaagttgaagcaaaaagctcctttcctacaacaaaataacggcctcaagtagttctacttccttttatcttctattactattttcctttcta |
35902507 |
T |
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| Q |
310 |
agaaatggactgctatccaatatccatactagatttcactttcacattgcactgttacattgaagcttgcaatttcatctctgttatttgcttgaccatt |
409 |
Q |
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| T |
35902508 |
agaaattgactgctatccaatatccatactagatttcactttcacattgcactgttacattgaagcttgcaatttcatctctgttatttgcttgaccatt |
35902607 |
T |
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| Q |
410 |
acatactgttgctgtcgcggactgctgctgcttctgtcacggcctactgctgacttccgggtctgctacagctgctattgcggaattatg |
499 |
Q |
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| T |
35902608 |
acatactgttgctgtcgcggactgctgctgcttctgtcacggcctactgctgacttccgggtctgctacagctgctattgcggaattatg |
35902697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 32 - 253
Target Start/End: Original strand, 35903731 - 35903943
Alignment:
| Q |
32 |
atgataaaatacaaataatattacatataatacacaaaacaggatgggtgaacttgatttctctgcc----ttcacatcagagttctacatgataccaca |
127 |
Q |
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|||||| |||||| |||||||||||||||||||||||| ||| ||| |||||||||||||||||| | |||||| | ||||||| || |
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| T |
35903731 |
atgatataatacagataatattacatataatacacaaagaaggctggacgaacttgatttctctgcctctttgtacatcaaaattctacagacta----t |
35903826 |
T |
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| Q |
128 |
tacaataatctatttaagtactgtatacttacaaaacagtcctcaaagtttgtattgcaatctagaatagaatagtactctagcttccttgaagttgaag |
227 |
Q |
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| T |
35903827 |
tacaataatctatttaagtattgtatactctaaaagtagccctcaaagtttgtattgtactctag--------agttctctagcttccttgacgttgaag |
35903918 |
T |
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| Q |
228 |
caaaaagctcctttcctacaacaaaa |
253 |
Q |
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| T |
35903919 |
caaaaagct-cttccctacaacaaaa |
35903943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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