View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12682_low_5 (Length: 494)
Name: NF12682_low_5
Description: NF12682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12682_low_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Original strand, 12267756 - 12268249
Alignment:
| Q |
1 |
atggagagatgttttataaggattcttacatgtttcaaaatcctccattgaataagcagcctagggctaagaatgtttggaaatcatttgttcctccttc |
100 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12267756 |
atggtgagatgttttataaggatgcttacatgtttcaaaatcctccattgtataagcagcctagggctaagaatgtttggaaatcatttgttcctccttc |
12267855 |
T |
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| Q |
101 |
cagttcaatgccatcagatcacacaatgaataaatgacaaagctatagatactcatgctatgaattaaaatctaataacttgaacccttcccactataga |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12267856 |
cagttcaatgccatcagatcacgcaatgaataaatgacaaagctatagatactcatactatgaattaaaatctaataacttgaacccttcccactataga |
12267955 |
T |
|
| Q |
201 |
aattaaagaggccttcaaagttgtcaatttggatttgattctatccacaactttctcttcaacaagaagattattgttgtagacactatcattagtttga |
300 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12267956 |
aattaaagatgccttcaaagttgtcaatttggatttgattctatccacaactttctcttcaacaagaagattattgttgtagacactatcattagtttga |
12268055 |
T |
|
| Q |
301 |
ctctgaatttgatgaaggttagatttagttacttggaaattgatgttaatgtccccgaacacattcttattccaatccttatgtttgactttcaaggatt |
400 |
Q |
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|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12268056 |
ctctgaatttgatgaaggttgtattcagttacttggaaattgatgttaatgtccccgaacacattcttattccaatccttatgtttgactttcaaggatt |
12268155 |
T |
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| Q |
401 |
tgatgttttgactaagctcaaacatggggcacctagcgtaaacctcattccaagttttgtttaatgatattgatacattcaagatgagaatacc |
494 |
Q |
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||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12268156 |
tgatgttttgactaagcacaaacatggggcacctagtgtaaacctcattccaagttttgtttaatgatattgatacattcaagatgagaatacc |
12268249 |
T |
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