View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12682_low_6 (Length: 486)
Name: NF12682_low_6
Description: NF12682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12682_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 34 - 478
Target Start/End: Original strand, 2458332 - 2458782
Alignment:
| Q |
34 |
tagacgcacacatataactttcaaactaattaatgccatctgttttaaaaattgtggtatttattatttttgtctaaagaggaattctgatggctccact |
133 |
Q |
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||||| |||||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2458332 |
tagacacacacatataacttccaaactaattaatgtcatctattttaaaaattatggtatttattttttttgtctaaagaggaattctgatggctccact |
2458431 |
T |
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| Q |
134 |
ttgtgttacacaacacgattagttgctaagggattccatcaacgt--------cgactataaggacaaatttagccttgttgtcaaacaaaatggtgtta |
225 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2458432 |
ttgtattacacaacacgattagttgctaagggattccatcaacgttctggtatcgactataaggaccaatttagccttgttgtcaaacaaaatggtgtta |
2458531 |
T |
|
| Q |
226 |
tgcatttctatttcttctcaatgaaacttttaatgaagaagtatatatgtgtcaaccacctgtttttgtgtatcaaatatacatacgatctaattatgtt |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
2458532 |
tgcatttctatttcttctcaatgaaacttttaatgaagaagtatatatgtctcaaccacctgtttttgtgtatcaaatatacatac--tctaattatatt |
2458629 |
T |
|
| Q |
326 |
tgcatgcttcaaaggtctctttatggcctcaaggaagctccaaatgcatacactaatatatatgtggccataaagacaatattaattgtggcctattttg |
425 |
Q |
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||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2458630 |
tgcatgcttcaaaagtctctttatggcctcaacgaagctccaaatgcatacactaatatatatgtggccataaagacaatattaattgtggcctattttg |
2458729 |
T |
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| Q |
426 |
ttgtctatgttgatgatttacttttcaacggtaactccttcaattttcatctc |
478 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2458730 |
ttgtctatgttgatgatttacttttcaacggtaacaccttcaattttcatctc |
2458782 |
T |
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