View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12682_low_7 (Length: 480)
Name: NF12682_low_7
Description: NF12682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12682_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 181 - 461
Target Start/End: Complemental strand, 35356 - 35076
Alignment:
| Q |
181 |
acatcaacaatgaatgaatgtgtgagagaaggtggctgaccaaaagtgaaaacatagccattgttggacatgagttgtttgttggcgatgataattccaa |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35356 |
acatcaacaatgaatgaatgtgtgagagaaggtggctgaccaaaagtgaaaacatagccattgttggacatgagttgtttgttagcgatgataattccaa |
35257 |
T |
|
| Q |
281 |
cggagctgacaatgttcatcccccatgctccaacattagataaagatgcttttttctttactactacattctccattatatctctctatctataataata |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35256 |
cggagctgacaatgttcatcccccatgctccaacattagataaagatgcttttttctttactactacattctccattatatctctctatctataataata |
35157 |
T |
|
| Q |
381 |
ataacaacatcaacattaatcaatttgaaggataaccgctcctcctcctcccccttggctagatggatctaagaaatagtc |
461 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35156 |
ataacaacaacaacattaatcaatttgaaggataaccgctcctcctcctcccccttggctagatggatctaagaaatagtc |
35076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 35544 - 35380
Alignment:
| Q |
1 |
ggcgaccatagagaaccaaagaagctcccacatagggacatgctttgatgaagacgagtaaccggtagcattggagagtataccaacgagagcggtaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35544 |
ggcgaccatagagaaccaaagaagctcccacatagggacatgctttgatgaagacgagtaaccggtagcattggagagtataccaacgagagcggtaaca |
35445 |
T |
|
| Q |
101 |
gcaaaatggcagccagttaacgtgctggctgaaagaaaaaagaaaatattgttgagatggatggc |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35444 |
gcaaaatggcagccagttaacgtgctggctgaaagaaaaaagaaaatattgttgagatggatggc |
35380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 223 - 313
Target Start/End: Original strand, 8677443 - 8677533
Alignment:
| Q |
223 |
aaagtgaaaacatagccattgttggacatgagttgtttgttggcgatgataattccaacggagctgacaatgttcatcccccatgctccaa |
313 |
Q |
| |
|
||||||||| ||||||||||||||||||| || ||||| || || ||||||||||||||||| || |||| |||||| ||||||||||||| |
|
|
| T |
8677443 |
aaagtgaaagcatagccattgttggacataagctgtttattagccatgataattccaacggaactcacaacgttcataccccatgctccaa |
8677533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University