View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12682_low_9 (Length: 443)
Name: NF12682_low_9
Description: NF12682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12682_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 11 - 428
Target Start/End: Original strand, 34059656 - 34060070
Alignment:
| Q |
11 |
cacagatcaatctcacattttcaggcaaaaccacactttgtgattcgatatcataacttttttgcttcggcgcttccttacttgggtcaagtcagaacaa |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34059656 |
cacagatcaatctcacattttcaggcaaaaccacactttgtgattcgatatcacaacttttttgcttcggcgcttccttacttgggtcaagtcagaacaa |
34059755 |
T |
|
| Q |
111 |
tagttaatcgagtgaagcatgctgttaaaacagtatgaatgaagataaaaacattcaaggatgttcatggggctcaagagtgcatcgattttcattatca |
210 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34059756 |
tagttaatccagtgaagcatgctgttaaaacagtatgaatgaagataaaaacattcaaggatgttcatggggctcgagagtgcatcgattttcattatca |
34059855 |
T |
|
| Q |
211 |
tattatcaagtttattcaggaagtcaggtggacaactgaaaagcactgcggagattgaagagagcctgcaatgttggctcgcgttcatagtttccaactc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34059856 |
tattatcaagtttattcaggaagtcaggtggacaactgaaaagcactgcggagattgaagagagcctgcaatgttggctcgcgttcatagtttccaactc |
34059955 |
T |
|
| Q |
311 |
taaaagagcagtacaacagtgcatgcttcctagtatagctgnnnnnnnnnngacagacttcgataaaatcaaccaatcatcacagaaaacagttgattca |
410 |
Q |
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| T |
34059956 |
taaaagagcagtacaacagtgcatgctacctagtatagctgtttttttt---acatacttcgataaaatcaaccaatcatcacagaaaacagttgattca |
34060052 |
T |
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| Q |
411 |
attcagagattgagagtt |
428 |
Q |
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|||||||||||||||||| |
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| T |
34060053 |
attcagagattgagagtt |
34060070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 22 - 173
Target Start/End: Complemental strand, 22232676 - 22232520
Alignment:
| Q |
22 |
ctcacattttcaggcaaaaccacactttgtgattcgatatcataa--cttttttgcttcggcg---cttccttacttgggtcaagtcagaacaatagtta |
116 |
Q |
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|||| |||| |||| ||| ||||||||||| |||| |||||| || ||| | |||||||||| || || ||||||| |||||| || |||||||| | |
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| T |
22232676 |
ctcatatttccaggaaaagccacactttgtcattcaatatcacaaaacttctctgcttcggcggcactaccctacttggatcaagtaaggacaatagtga |
22232577 |
T |
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| Q |
117 |
atcgagtgaagcatgctgttaaaacagtatgaatgaagataaaaacattcaaggatg |
173 |
Q |
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||| |||| |||| ||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
22232576 |
atccagtggagcaggctgtcaaaacagttggaatgaagataaaaacattcaaggatg |
22232520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 350
Target Start/End: Complemental strand, 22232376 - 22232275
Alignment:
| Q |
249 |
aaaagcactgcggagattgaagagagcctgcaatgttggctcgcgttcatagtttccaactctaaaagagcagtacaacagtgcatgcttcctagtatag |
348 |
Q |
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||||||||||| |||||||||||| |||||| |||||| ||||||||||||||| || |||||||||| |||||| |||||||| || ||| ||| |
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| T |
22232376 |
aaaagcactgcagagattgaagaggatttgcaatattggcttaggttcatagtttccaattccaaaagagcaggacaacaatgcatgctgccaagtgtag |
22232277 |
T |
|
| Q |
349 |
ct |
350 |
Q |
| |
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|| |
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|
| T |
22232276 |
ct |
22232275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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