View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12683_high_1 (Length: 590)

Name: NF12683_high_1
Description: NF12683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12683_high_1
NF12683_high_1
[»] chr4 (6 HSPs)
chr4 (319-583)||(6030479-6030742)
chr4 (31-320)||(6029993-6030285)
chr4 (506-573)||(5851976-5852043)
chr4 (36-111)||(6037686-6037761)
chr4 (518-560)||(5570099-5570141)
chr4 (319-371)||(6029948-6030000)
[»] chr5 (12 HSPs)
chr5 (44-185)||(31475648-31475786)
chr5 (36-185)||(40843022-40843168)
chr5 (36-185)||(31284963-31285109)
chr5 (46-181)||(31279194-31279326)
chr5 (46-185)||(31407131-31407267)
chr5 (36-185)||(31281678-31281824)
chr5 (36-185)||(31505595-31505741)
chr5 (46-185)||(31643589-31643725)
chr5 (36-124)||(31332435-31332523)
chr5 (36-185)||(31317604-31317750)
chr5 (36-122)||(31381222-31381308)
chr5 (44-185)||(31396005-31396143)
[»] chr3 (1 HSPs)
chr3 (37-123)||(25708754-25708840)
[»] chr8 (1 HSPs)
chr8 (513-562)||(23268603-23268652)


Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 319 - 583
Target Start/End: Original strand, 6030479 - 6030742
Alignment:
Q  319 aaaggttcctaataaatgtaacttttatggtatgaatttgtttggtgtttgtacctctaccgacttctggttataaataatttgctaaagttctctagtg 418  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6030479 aaaggttcctaataaatgcaacttttatggtatgaatctgtttggtgtttgtacctctaccgacttctggttataaataatttgctaaagttctctagtg 6030578  T
Q  419 tcttactgctatactatttttcaaaagtgaaggacaaagaaccagtaaattaatatgactacactggttgagactcacagtagacagcaatgaaaattgc 518  Q
    |||||||||||   |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6030579 tcttactgctact-tattttacaaaagtgaaggacaaagaaccagtaaattaatatgactacactggttgagactcacagtagacagcaatgaaaattgc 6030677  T
Q  519 attactttcattgttttcctgccttctatgctactactgcatttacatcagtttcaaattctctg 583  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6030678 attactttcattgttttccttccttctatgctactactgcatttacatcagtttcaaattctctg 6030742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 31 - 320
Target Start/End: Original strand, 6029993 - 6030285
Alignment:
Q  31 tgtttataactgaaatttaatcttcatgagtatcatagttagacatcc-gagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgt 129  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  6029993 tgtttgtaactgaaatttaatcttcatgagtatcatagttagacatcctgagtaaaatgtaaagaagatccacttcgaatccgcactgagtttgcagtgt 6030092  T
Q  130 ggacaaactcattgacatgataagaaaggtagcacatgaaataagactatatgcatgttttcca-ctactacgatggttaaatacttggaatttttgggt 228  Q
     ||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||| || ||||||||| ||||||||||||||| || ||     
T  6030093 cgacaaactcattgacatgataagaaaggtagaacatgaaagaggactatatgcatgttttccatctcctacgatggctaaatacttggaattattagga 6030192  T
Q  229 aatgtttttccttcaaagatgttattataggaaacgttttgcaatt-aaaaaacagacatgtttgcatgcaaagatcttattattataggaaa 320  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6030193 aatgtttttccttcaaagatgttactataggaaacgttttgcaattaaaaaaacagacatgtttgcatgcaaagatcttattattataggaaa 6030285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 506 - 573
Target Start/End: Original strand, 5851976 - 5852043
Alignment:
Q  506 caatgaaaattgcattactttcattgttttcctgccttctatgctactactgcatttacatcagtttc 573  Q
    |||||| |||| |||||||| |||||||||||| | |||| ||||||||||||||||| |||||||||    
T  5851976 caatgagaattacattacttccattgttttccttcattctctgctactactgcatttatatcagtttc 5852043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 6037686 - 6037761
Alignment:
Q  36 ataactgaaatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatcc 111  Q
    ||||||| |||| |||| ||||||||| || ||||||||||| ||| |||||||||| ||||| ||||||||||||    
T  6037686 ataactgcaattgaatcgtcatgagtaacacagttagacatctgagaaaaaagtaaaaaagattcacttcgaatcc 6037761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 518 - 560
Target Start/End: Original strand, 5570099 - 5570141
Alignment:
Q  518 cattactttcattgttttcctgccttctatgctactactgcat 560  Q
    ||||| ||||||||||||||| |||||||||||||||||||||    
T  5570099 cattagtttcattgttttccttccttctatgctactactgcat 5570141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 371
Target Start/End: Original strand, 6029948 - 6030000
Alignment:
Q  319 aaaggttcctaataaatgtaacttttatggtatgaatttgtttggtgtttgta 371  Q
    |||||||||||||||||| |||||||||| ||| | |||||||| ||||||||    
T  6029948 aaaggttcctaataaatgcaacttttatgttatcagtttgtttgttgtttgta 6030000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 44 - 185
Target Start/End: Original strand, 31475648 - 31475786
Alignment:
Q  44 aatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaaactcattg 143  Q
    ||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||   || | || ||||||| ||    
T  31475648 aatttaatcttcatgagtaacacagttagacatccgagaaaaaagtaaagaagatccacttcgaatccacactgagatt---gcctcgagaaactcagtg 31475744  T
Q  144 acatgataagaaaggtagcacatgaaataagactatatgcat 185  Q
    ||||||||  ||||| |||||| ||||| || ||||| ||||    
T  31475745 acatgatagcaaaggcagcacaagaaatgaggctataagcat 31475786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 36 - 185
Target Start/End: Original strand, 40843022 - 40843168
Alignment:
Q  36 ataactgaaatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaa 135  Q
    ||||||| ||||||||||||||||||| || |||||||||||| || ||||||||||||||||||||||||||||| || |||| ||   || | |||||    
T  40843022 ataactggaatttaatcttcatgagtaacacagttagacatccaagaaaaaagtaaagaagatccacttcgaatccacaatgagatt---gcctcgacaa 40843118  T
Q  136 actcattgacatgataagaaaggtagcacatgaaataagactatatgcat 185  Q
    ||||| ||||||||||  ||||| |||||| ||||| || ||||| ||||    
T  40843119 actcagtgacatgatagcaaaggcagcacaagaaatgaggctataagcat 40843168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 36 - 185
Target Start/End: Complemental strand, 31285109 - 31284963
Alignment:
Q  36 ataactgaaatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaa 135  Q
    ||||||| ||||||||||||||||||  || | ||| ||||||||| ||||||||||||| ||| ||||| |||||||| |||||||||  ||| |||||    
T  31285109 ataactgcaatttaatcttcatgagttgcacaattaaacatccgagaaaaaagtaaagaaaatcgacttcaaatccgcattgagtttgc--cgt-gacaa 31285013  T
Q  136 actcattgacatgataagaaaggtagcacatgaaataagactatatgcat 185  Q
    ||||||| ||||||||  ||||| |||||||||||| || ||||||||||    
T  31285012 actcattaacatgatagaaaaggaagcacatgaaatgaggctatatgcat 31284963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 46 - 181
Target Start/End: Original strand, 31279194 - 31279326
Alignment:
Q  46 tttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaaactcattgac 145  Q
    ||||||||||||||||   | | |||||||||| || ||||||||||||||||| ||||| |||||||||||||||||| ||   |||||||| | ||||    
T  31279194 tttaatcttcatgagttgtacaattagacatccaagaaaaaagtaaagaagatcaacttcaaatccgcactgagtttgccgc---gacaaactaagtgac 31279290  T
Q  146 atgataagaaaggtagcacatgaaataagactatat 181  Q
    ||||||  ||||| |||||||||||| || ||||||    
T  31279291 atgatagcaaaggaagcacatgaaatgaggctatat 31279326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 46 - 185
Target Start/End: Original strand, 31407131 - 31407267
Alignment:
Q  46 tttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaaactcattgac 145  Q
    ||||||||||||||||  |||| |||||||||| || ||||||||||||||||||||||||| ||| ||||||| ||||    | ||||| |||||||||    
T  31407131 tttaatcttcatgagttgcataattagacatccaaggaaaaagtaaagaagatccacttcgattccacactgagattgcc---ttgacaagctcattgac 31407227  T
Q  146 atgataagaaaggtagcacatgaaataagactatatgcat 185  Q
    ||||||  |||||  ||||||||||| |  ||||||||||    
T  31407228 atgatagcaaaggcggcacatgaaatcaagctatatgcat 31407267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 36 - 185
Target Start/End: Complemental strand, 31281824 - 31281678
Alignment:
Q  36 ataactgaaatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaa 135  Q
    ||||||| ||||||| ||||||||||  || | ||| ||||||||| |||| |||||||||||||||| ||||||||||||||||||   || |  ||||    
T  31281824 ataactgcaatttaaccttcatgagttgcacaattaaacatccgagaaaaatgtaaagaagatccactacgaatccgcactgagttt---gccttaacaa 31281728  T
Q  136 actcattgacatgataagaaaggtagcacatgaaataagactatatgcat 185  Q
    ||| | ||||||||||  |||||  ||||||||||| ||||| |||||||    
T  31281727 acttagtgacatgatagcaaaggcggcacatgaaattagactgtatgcat 31281678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 36 - 185
Target Start/End: Original strand, 31505595 - 31505741
Alignment:
Q  36 ataactgaaatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaa 135  Q
    ||||||| |||||||||||||| |||   | | ||| ||||||||| |||||||||||||||||||| || |||||||||||||||||| ||   |||||    
T  31505595 ataactgcaatttaatcttcattagttgtacaattaaacatccgagaaaaaagtaaagaagatccacctcaaatccgcactgagtttgccgc---gacaa 31505691  T
Q  136 actcattgacatgataagaaaggtagcacatgaaataagactatatgcat 185  Q
    ||| |  |||||||||  ||||| ||||| |||||| || ||||||||||    
T  31505692 actgagcgacatgatagcaaaggaagcacttgaaatgaggctatatgcat 31505741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 46 - 185
Target Start/End: Original strand, 31643589 - 31643725
Alignment:
Q  46 tttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaaactcattgac 145  Q
    ||||||||||||||||   | | |||||||||| || ||||||||||||||||| | ||| |||||||||| |||||   |||| |||||||| | ||||    
T  31643589 tttaatcttcatgagttggacaattagacatccaaggaaaaagtaaagaagatcgaattcaaatccgcactcagttt---gcgtcgacaaactaagtgac 31643685  T
Q  146 atgataagaaaggtagcacatgaaataagactatatgcat 185  Q
    ||||||  ||||| |||||| ||||| || ||||||||||    
T  31643686 atgatagcaaaggaagcacaagaaatgaggctatatgcat 31643725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 31332523 - 31332435
Alignment:
Q  36 ataactgaaatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgc 124  Q
    ||||||| ||||||||||||||||||  || | |||| | ||| || ||||| ||||||||||| | ||||||||||||||||||||||    
T  31332523 ataactgcaatttaatcttcatgagttgcacaattaggcttcctaggaaaaaataaagaagatcgatttcgaatccgcactgagtttgc 31332435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 185
Target Start/End: Complemental strand, 31317750 - 31317604
Alignment:
Q  36 ataactgaaatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaa 135  Q
    ||||||| || |||||||||||||||   | | |||||||||| || ||||| ||||||||||| | ||| ||||| ||||||||||||    | |||||    
T  31317750 ataactgcaacttaatcttcatgagttgaacaattagacatcccaggaaaaaataaagaagatcaatttcaaatccccactgagtttgcc---ttgacaa 31317654  T
Q  136 actcattgacatgataagaaaggtagcacatgaaataagactatatgcat 185  Q
    ||| | |||||| |||  ||||| |||||||||||| | |||||||||||    
T  31317653 actaagtgacataatagcaaaggcagcacatgaaattaaactatatgcat 31317604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 36 - 122
Target Start/End: Complemental strand, 31381308 - 31381222
Alignment:
Q  36 ataactgaaatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagttt 122  Q
    ||||||| ||||||||||||||||||  || | |||| | ||| || ||||| ||||||||||| | ||||||||||||||||||||    
T  31381308 ataactgcaatttaatcttcatgagttgcacaattaggcttcctaggaaaaaataaagaagatcgatttcgaatccgcactgagttt 31381222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 44 - 185
Target Start/End: Complemental strand, 31396143 - 31396005
Alignment:
Q  44 aatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaaactcattg 143  Q
    ||||||||||||||||||   | | ||| |||||||||  ||||||| | |||||||||||| ||||| |||||| |||||  ||   |||| || | ||    
T  31396143 aatttaatcttcatgagttgtacaattaaacatccgagataaaagtacataagatccacttcaaatccacactgaatttgcctcg---acaagctaagtg 31396047  T
Q  144 acatgataagaaaggtagcacatgaaataagactatatgcat 185  Q
    |||| |||  ||||| |||||||||||| |||||||||||||    
T  31396046 acatcatagaaaaggcagcacatgaaattagactatatgcat 31396005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 25708840 - 25708754
Alignment:
Q  37 taactgaaatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttg 123  Q
    |||||| ||||| | ||||||||||  || | |||||||||| || ||||| ||||||||||| ||||| ||||| |||||||||||    
T  25708840 taactgcaattttaccttcatgagttgcacaattagacatccaagaaaaaaataaagaagatcaacttcaaatccacactgagtttg 25708754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 562
Target Start/End: Complemental strand, 23268652 - 23268603
Alignment:
Q  513 aattgcattactttcattgttttcctgccttctatgctactactgcattt 562  Q
    |||| ||||||||||||||||||||| |||| | ||| ||||||||||||    
T  23268652 aattacattactttcattgttttccttccttttctgccactactgcattt 23268603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University