View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12683_high_2 (Length: 485)
Name: NF12683_high_2
Description: NF12683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12683_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 17 - 467
Target Start/End: Original strand, 39336029 - 39336479
Alignment:
| Q |
17 |
cacagatggacttcaagcctccctaggttaggttaggtcctacactagggggcaaaatctgcaatgaaaacttatatgtcttggatgagaaggccacggt |
116 |
Q |
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| T |
39336029 |
cacagatggacttcaagcctccctaggttaggttaggtcctacactagggggcaaaatctgcaatgaaaacttatatgtcttggatgagaaggccacggt |
39336128 |
T |
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| Q |
117 |
tgattaattagttgcattccataatgcatattgcactgcaatagcatttgattttaatttaatttatgatcatttaaactagctagaagccccacacatt |
216 |
Q |
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| T |
39336129 |
tgattaattagttgcattccataatgcatattgcactgcaatagcatttgattttaatttaatttatgatcatttaaactagctagaagccccacacatt |
39336228 |
T |
|
| Q |
217 |
taccatttgtgaagcagtggcaactgttttccatcaaccacttcactaaccgacagagacattctgtctaccttatgttttggtgccataccccaattca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39336229 |
taccatttgtgaagcagtggcaactgttttccatcaaccacttcactaaccgacagagacattctgtctaccttatgttttggtgccataccccaattca |
39336328 |
T |
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| Q |
317 |
ttttgaagttactatcacaatgatttgttatttatttattaaagacattgtaaaattgtgaatgctatctttgacgttttcaacctttttaactaagata |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39336329 |
ttttgaagttactatcacaatgatttgttatttatttattaaagacattgtaaaattgtgaatgctatctttgacgttttcaacctttttaactaagata |
39336428 |
T |
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| Q |
417 |
gcttaagccaacattaattgaatatgttgctatttatctgaaagtctattc |
467 |
Q |
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| T |
39336429 |
gcttaagccaacattaattgaatatgttgctatttatctgaaagtctattc |
39336479 |
T |
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