View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12683_high_3 (Length: 464)
Name: NF12683_high_3
Description: NF12683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12683_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 16 - 423
Target Start/End: Complemental strand, 30535796 - 30535389
Alignment:
| Q |
16 |
accagccaccatgcacaaatcatcctctttcacaatgcaacatatctattctacctttaacaaaatatgattcaaactagggtttgaatcatatggcagc |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30535796 |
accagccaccatgcacaaatcatcctctttcacaatgcaacatatctattctaccgttaacaaaatatgattcaaactagggtttgaatcatatggcagc |
30535697 |
T |
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| Q |
116 |
tagggtttgtaatttcttgagaaaatattcaaaaaagtaagcaaagtgtctgctacttttaacttgttaaggtacaatagtccgtcatcaatttcttttc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30535696 |
tagggtttgtaatttcttgagaaaatattcaaaaaagtaagaaaagtgtctgctacttttaacttgttaaggtacaatagtccgtcatcaatttcttttc |
30535597 |
T |
|
| Q |
216 |
atttaggagaaaatttcaataaccaaaataaggtaataaagttgcatactaacccttcaaattcttctcttgcgttttaaacgtttcaacaaagattgca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
30535596 |
atttaggagaaaatttcaataaccaaaataaggtaataaagttgcatactaacccttcaaattcttctcttgcgttttaaacgtttcaacaaagattgta |
30535497 |
T |
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| Q |
316 |
ctccttcttgcaaagttgctttccttccctttttgtagttccataattctgaggttacatatctcccactaggattacattcattcatcttcatcaaagc |
415 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30535496 |
ctccttcttgcaaagttgctttccttccctctttgtagttccataattctgaggttacatatctcccactaggattacattcattcatcttcatcaaagc |
30535397 |
T |
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| Q |
416 |
tttcacca |
423 |
Q |
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|||||||| |
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| T |
30535396 |
tttcacca |
30535389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 314 - 453
Target Start/End: Complemental strand, 30449374 - 30449235
Alignment:
| Q |
314 |
cactccttcttgcaaagttgctttccttccctttttgtagttccataattctgaggttacatatctcccactaggattacattcattcatcttcatcaaa |
413 |
Q |
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|||||||||||||||||||||| |||||||| ||| ||||||||||| |||||||||||||||||||||||||||||| ||||||| |||| | | ||| |
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| T |
30449374 |
cactccttcttgcaaagttgctctccttcccgctttatagttccataactctgaggttacatatctcccactaggattatattcattaatctccgttaaa |
30449275 |
T |
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| Q |
414 |
gctttcaccactgcattatatgccctttcacccacttctt |
453 |
Q |
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| T |
30449274 |
gatgccaccacggcactatatgccttttcacccacttctt |
30449235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 317 - 436
Target Start/End: Complemental strand, 30457128 - 30457009
Alignment:
| Q |
317 |
tccttcttgcaaagttgctttccttccctttttgtagttccataattctgaggttacatatctcccactaggattacattcattcatcttcatcaaagct |
416 |
Q |
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|||||||||||| |||||| ||||| ||| ||||| |||||||| ||||||| ||| | ||| |||||||||||| |||||||||||| |||||||| |
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| T |
30457128 |
tccttcttgcaatgttgctctcctttcctctttgtggttccatagttctgagattagacatccaccactaggattatattcattcatctctttcaaagct |
30457029 |
T |
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| Q |
417 |
ttcaccactgcattatatgc |
436 |
Q |
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|| |||| |||| |||||| |
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| T |
30457028 |
atcgccacggcatcatatgc |
30457009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 405
Target Start/End: Complemental strand, 30475600 - 30475512
Alignment:
| Q |
317 |
tccttcttgcaaagttgctttccttccctttttgtagttccataattctgaggttacatatctcccactaggattacattcattcatct |
405 |
Q |
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|||||||||||| |||||| ||||| || | |||||||||||||||||| || ||||| |||||||||||| |||||||||||| |
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| T |
30475600 |
tccttcttgcaatgttgctctccttttctcactatagttccataattctgagattggatatccgccactaggattatattcattcatct |
30475512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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