View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12684_high_4 (Length: 499)
Name: NF12684_high_4
Description: NF12684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12684_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 5 - 482
Target Start/End: Complemental strand, 13206583 - 13206105
Alignment:
| Q |
5 |
gtttttaaatgcgatacaatgtgagaaaataatctgccaagtcccaatatgaaagcatggaaaaggatcactcaaagaatgnnnnnnnnnnnnnnnnn-c |
103 |
Q |
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| T |
13206583 |
gtttttaaatgcgatacaatgtgagaaaataatctgccaagtcccaatatgaaagcatggaaaaggatcactcaaagaatgaaaaaaaaaaaaaaaaaac |
13206484 |
T |
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| Q |
104 |
ggaattttcgaccaagtttccgcctcatgcacccctataggcgcatggctatgggaaaaatagctttgaaatagttgagaacataagaaaaagtatctta |
203 |
Q |
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| T |
13206483 |
ggaattttcgaccaagtttccgcctcatgcacccctataggcgcatggctatgggaaaaatagctttgaaatagttgagaacataagaaaaagtatctta |
13206384 |
T |
|
| Q |
204 |
agagttagtaaattttccatcttcgtatttgagaatatttatgtgattatgagaattttttattctattactctatgaaaataagttgtattcctatccc |
303 |
Q |
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| T |
13206383 |
agagttagtaaatgttccatcttcgtatttgagaatatttatgtgattatgagaattttttattctattactctatgaaaataagttgtattcctatccc |
13206284 |
T |
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| Q |
304 |
atcaatgaagctagaggatgtagttttttctctcctaaaagaattttcaacattgagagaagaagtaaattcgacggttgatttctttttctacaaagta |
403 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
13206283 |
atcaatgaagctagaggatttagttttttctctcctaaaagaattttcaacattgagagaagaagtaaattcgacagttgatttctttttctacaaagta |
13206184 |
T |
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| Q |
404 |
aattgttataaccattttgatcaagatgttatttggatattctcaagtttttcctaagctaaatctactctactatgtg |
482 |
Q |
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| T |
13206183 |
aattgttataaccattttgatcaagatgttatttggatattctcaagtttttcctaagctaaatctactctactatgtg |
13206105 |
T |
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