View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12684_high_5 (Length: 474)
Name: NF12684_high_5
Description: NF12684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12684_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 395
Target Start/End: Complemental strand, 19272333 - 19271956
Alignment:
| Q |
18 |
gatcctgcaaattaactttgccattagtaaatgtgacaacacagtcatgaaaacgagtcgatcgactgataaagattaaatcaaatggactttcgggcac |
117 |
Q |
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| T |
19272333 |
gatcctgcaaattaactttgccattagtaaatgtgacaacacagtcatgaaaacgagtcgatcgactgataaagattaaatcaaatggactttcgggcac |
19272234 |
T |
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| Q |
118 |
ataaaggacaaatgtaattgataaagaagaaataatttggtcaatgtcaattgcgccaattccttgagactgtgtttcagaaccattggttgagacgata |
217 |
Q |
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| T |
19272233 |
ataaaggacaaatgtaattgataaagaagaaataatttggtcaatgtcaattgcgccaattccttgagactgtgtttcagaaccattggttgagacgata |
19272134 |
T |
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| Q |
218 |
ctaggtaagtagctagatgtgatgagaggagaaaataaccttattaagagtaatatgatgaaatgcaccataatcgagaaccaatagagtaagtgaaggt |
317 |
Q |
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| T |
19272133 |
ctaggtaagtagctagatgtgatgagaggagaaaataaccttattaagagtaatatgatgaaatgcaccataatcgagaaccaatagagtaagtgaaggt |
19272034 |
T |
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| Q |
318 |
aactggaaattgcaagcaactaatttaccaaggtgtgccccttaaataacaggtcctgagttctggagatactttacc |
395 |
Q |
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| T |
19272033 |
aactggaaattgcaagcaactaatttaccaaggtgtgccccttaaataacaggtcctgagttctgaagatactttacc |
19271956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 14168889 - 14169008
Alignment:
| Q |
19 |
atcctgcaaattaactttgccattagtaaatgtgacaacacagtcatgaaaacgagtcgatcgactgataaagattaaatcaaatggactttcgggcaca |
118 |
Q |
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| T |
14168889 |
atcctgcaacgtaacattgctatttgtaaaggtgacaacacagtcatgcgaacgggtcaattgagtgatagaaattaaattaaatgggcatccaagaaca |
14168988 |
T |
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| Q |
119 |
taaaggacaaatgtaattga |
138 |
Q |
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| T |
14168989 |
taaaggacaaatgtaattga |
14169008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 146
Target Start/End: Complemental strand, 55253474 - 55253358
Alignment:
| Q |
30 |
taactttgccattagtaaatgtgacaacacagtcatgaaaacgagtcgatcgactgataaagattaaatcaaatggactttcgggcacataaaggacaaa |
129 |
Q |
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|||| ||||| |||||||| ||||||| |||||| || ||||| || | |||||| | | ||||||| ||||||| | | || |||||||||||| | |
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| T |
55253474 |
taacattgcctttagtaaaggtgacaatacagtcttgcgaacgaatcagttgactgagagaaattaaattaaatggagctccaggaacataaaggacaga |
55253375 |
T |
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| Q |
130 |
tgtaattgataaagaag |
146 |
Q |
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| T |
55253374 |
tgtaattgacaaagaag |
55253358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 138
Target Start/End: Original strand, 22784490 - 22784586
Alignment:
| Q |
41 |
ttagtaaatgtgacaacacagtcatgaaaacgagtcgatcgactgataaagattaaatcaaatggactttcgggcacataaaggacaaatgtaattga |
138 |
Q |
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|||||||| ||||||||||||||||| ||| |||| || || |||| | ||||||| ||||||| | ||||| ||| ||||||| ||||||||||| |
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| T |
22784490 |
ttagtaaaggtgacaacacagtcatgcgaacaagtcaattgagtgatggaaattaaattaaatgga-tatcgggaacacaaaggactaatgtaattga |
22784586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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