View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12684_high_7 (Length: 276)
Name: NF12684_high_7
Description: NF12684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12684_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 30831321 - 30831065
Alignment:
| Q |
1 |
ggaaaaattcaagaatccatcaggaacttctcttttggtaccatcagttcaagagttagctaaagatggaaagatttcaaccgttccaccaagatacatt |
100 |
Q |
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| T |
30831321 |
ggaaaaattcaagaatccatcaggaacttctcttttggtaccatcagttcaagagttagctaaagatggaaagatttcaaccgttccaccaagatacatt |
30831222 |
T |
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| Q |
101 |
cagcctaatcatcaagacttgattctatctgaagttgatactaaccttgaaattccagttattgatatgtataagttgcattcacaagaatttgggagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
30831221 |
cagcctaatcatcaagacttgattctatctgaagttgatactaaccttcaaattccagttattgatatgtataagttgcattcagaagaatttggaagtt |
30831122 |
T |
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| Q |
201 |
cagaattggttaagtttcaccttgcttgcaaagattggggattctttcaggtttttt |
257 |
Q |
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| T |
30831121 |
cagaattgcttaagtttcaccttgcttgcaaagattggggattctttcaggtctttt |
30831065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 257
Target Start/End: Complemental strand, 30836739 - 30836491
Alignment:
| Q |
9 |
tcaagaatccatcaggaacttctcttttggtaccatcagttcaagagttagctaaagatggaaagatttcaaccgttccaccaagatacattcagcctaa |
108 |
Q |
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| T |
30836739 |
tcaagaacccatcaggtacttctcttttggtaccatcagttcaagagttatctaaagatggaaatatttcaaccgttccaccaagatacattcagcctaa |
30836640 |
T |
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| Q |
109 |
tcatcaagacttgattctatctgaagttgatactaaccttgaaattccagttattgatatgtataagttgcattcacaagaatttgggagttcagaattg |
208 |
Q |
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| T |
30836639 |
tcatcaagacttgattctctctgaagttgatactaaccttcaaattccagttattgatatgtataagttgcattcagaagaacttgggagttcagaattg |
30836540 |
T |
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| Q |
209 |
gttaagtttcaccttgcttgcaaagattggggattctttcaggtttttt |
257 |
Q |
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| T |
30836539 |
gttaagcttcaccttgcttgcaaagattggggtttctttcaggtctttt |
30836491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 9 - 252
Target Start/End: Complemental strand, 30854486 - 30854246
Alignment:
| Q |
9 |
tcaagaatccatcaggaacttctcttttggtaccatcagttcaagagttagctaaagatggaaagatttcaaccgttccaccaagatacattcagcctaa |
108 |
Q |
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||||||| || || |||||||||||| |||||||||||||||||||||| ||||| || ||| |||||||| |||||||||||||| |||||| || | |
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| T |
30854486 |
tcaagaacccctctggaacttctcttctggtaccatcagttcaagagttggctaagga---aaaaatttcaacagttccaccaagatatattcagtctca |
30854390 |
T |
|
| Q |
109 |
tcatcaagacttgattctatctgaagttgatactaaccttgaaattccagttattgatatgtataagttgcattcacaagaatttgggagttcagaattg |
208 |
Q |
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| T |
30854389 |
acacgatgaattggtcatcaatgaagctaatagtatacttgaaattccagttattgatatgaagaaattgctttctttagaatatgggagtttagaattg |
30854290 |
T |
|
| Q |
209 |
gttaagtttcaccttgcttgcaaagattggggattctttcaggt |
252 |
Q |
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| T |
30854289 |
tctaagcttcaccttgcttgcaaagattggggattctttcaggt |
30854246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 252
Target Start/End: Complemental strand, 30841973 - 30841733
Alignment:
| Q |
9 |
tcaagaatccatcaggaacttctcttttggtaccatcagttcaagagttagctaaagatggaaagatttcaaccgttccaccaagatacattcagcctaa |
108 |
Q |
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||||||| || || |||||||||||| ||||||||||||| ||||| || ||||| || |||||||||||| |||||| ||||||| |||||| || | |
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| T |
30841973 |
tcaagaacccctctggaacttctcttctggtaccatcagtccaagaattggctaagga---aaagatttcaacagttccagcaagatatattcagtctca |
30841877 |
T |
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| Q |
109 |
tcatcaagacttgattctatctgaagttgatactaaccttgaaattccagttattgatatgtataagttgcattcacaagaatttgggagttcagaattg |
208 |
Q |
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||| |||| ||| | | ||||| | ||| || |||||||||||||||||||||||| | || |||| ||| ||||| |||||||| ||||||| |
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| T |
30841876 |
acatgaagaattggtcatcaatgaagctaatagtatacttgaaattccagttattgatatgaagaaattgctttctttagaatatgggagtttagaattg |
30841777 |
T |
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| Q |
209 |
gttaagtttcaccttgcttgcaaagattggggattctttcaggt |
252 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
30841776 |
tctaagcttcaccttgcttgcaaagattggggattcttccaggt |
30841733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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