View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12684_low_10 (Length: 393)
Name: NF12684_low_10
Description: NF12684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12684_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 19 - 373
Target Start/End: Complemental strand, 19160935 - 19160581
Alignment:
| Q |
19 |
gctataacatatatatcaacaaataaacagaaaaacaaaaacaataactacaatggcaatacaggaacataattggacttacaatgctcatagaagtaaa |
118 |
Q |
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| T |
19160935 |
gctataacatatatatcaacaaataaacagaaaaacaaaaacaataactacaatggcaatacaggaacataattggacttacaatgctcatagaagtaaa |
19160836 |
T |
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| Q |
119 |
cctggggattccaaaacgacggaatatacatttaaacaaaaaagttccaaagaagattatacacatttgcacctgcaacaccggcaaagaatttacagaa |
218 |
Q |
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| T |
19160835 |
cctggggattccaaaacgacggaatatacatttaaacaaaaaagttccaaagaagattatacacatttgcacctgcaacaccggcaaagaatttacaaaa |
19160736 |
T |
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| Q |
219 |
atcacgcctgaatccatcggtccatgcgacggttccaccgaatctacccgcagcggcaggtttatgcatgttttataaaagttaataggtatctcatctt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
19160735 |
atcacgcctgaatccatcggtccatgcgacggttccagcgaatctacccgcagcggcaggtttatgcatgttttataagagttaataggtatctcatctt |
19160636 |
T |
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| Q |
319 |
gttcagaagacatgctatatcaaaactatatatgttgattgtgttccttttatta |
373 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19160635 |
gttcggaagacatgctatatcaaaactatatatgttgattgtgttccttttatta |
19160581 |
T |
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